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1.

rs1491522333 has merged into rs10594317 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    AAAAAAAA>-,A,AA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
    Chromosome:
    13:28715989 (GRCh38)
    13:29290126 (GRCh37)
    Canonical SPDI:
    NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
    Gene:
    SLC46A3 (Varview)
    Functional Consequence:
    intron_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    AAAAAAAAAAA=0./0 (ALFA)
    A=0.1713/858 (1000Genomes)
    HGVS:
    NC_000013.11:g.28715989_28715996del, NC_000013.11:g.28715990_28715996del, NC_000013.11:g.28715991_28715996del, NC_000013.11:g.28715993_28715996del, NC_000013.11:g.28715994_28715996del, NC_000013.11:g.28715995_28715996del, NC_000013.11:g.28715996del, NC_000013.11:g.28715996dup, NC_000013.11:g.28715995_28715996dup, NC_000013.11:g.28715994_28715996dup, NC_000013.11:g.28715993_28715996dup, NC_000013.11:g.28715989_28715996dup, NC_000013.10:g.29290126_29290133del, NC_000013.10:g.29290127_29290133del, NC_000013.10:g.29290128_29290133del, NC_000013.10:g.29290130_29290133del, NC_000013.10:g.29290131_29290133del, NC_000013.10:g.29290132_29290133del, NC_000013.10:g.29290133del, NC_000013.10:g.29290133dup, NC_000013.10:g.29290132_29290133dup, NC_000013.10:g.29290131_29290133dup, NC_000013.10:g.29290130_29290133dup, NC_000013.10:g.29290126_29290133dup, NG_053189.1:g.8028_8035del, NG_053189.1:g.8029_8035del, NG_053189.1:g.8030_8035del, NG_053189.1:g.8032_8035del, NG_053189.1:g.8033_8035del, NG_053189.1:g.8034_8035del, NG_053189.1:g.8035del, NG_053189.1:g.8035dup, NG_053189.1:g.8034_8035dup, NG_053189.1:g.8033_8035dup, NG_053189.1:g.8032_8035dup, NG_053189.1:g.8028_8035dup
    2.

    rs1491516147 [Homo sapiens]
      Variant type:
      DEL
      Alleles:
      CT>- [Show Flanks]
      Chromosome:
      13:28717485 (GRCh38)
      13:29291622 (GRCh37)
      Canonical SPDI:
      NC_000013.11:28717484:CT:
      Gene:
      SLC46A3 (Varview)
      Functional Consequence:
      intron_variant
      Validated:
      by frequency,by alfa
      MAF:
      -=0.00034/4 (ALFA)
      -=0.00038/34 (GnomAD)
      HGVS:
      3.

      rs1491511137 [Homo sapiens]
        Variant type:
        INS
        Alleles:
        ->AA [Show Flanks]
        Chromosome:
        13:28716990 (GRCh38)
        13:29291128 (GRCh37)
        Canonical SPDI:
        NC_000013.11:28716990::AA
        Gene:
        SLC46A3 (Varview)
        Functional Consequence:
        intron_variant
        Validated:
        by frequency,by alfa
        MAF:
        AA=0./0 (ALFA)
        HGVS:
        4.

        rs1491431360 [Homo sapiens]
          Variant type:
          SNV:
          Alleles:
          GG>-
          Chromosome:
          no mapping
          Canonical SPDI:
          5.

          rs1491422192 [Homo sapiens]
            Variant type:
            DELINS
            Alleles:
            CA>- [Show Flanks]
            Chromosome:
            13:28715978 (GRCh38)
            13:29290115 (GRCh37)
            Canonical SPDI:
            NC_000013.11:28715976:ACA:A
            Gene:
            SLC46A3 (Varview)
            Functional Consequence:
            intron_variant
            Validated:
            by frequency,by alfa
            MAF:
            A=0.00067/8 (ALFA)
            HGVS:
            6.

            rs1491236897 has merged into rs56878379 [Homo sapiens]
              Variant type:
              DELINS
              Alleles:
              TTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
              Chromosome:
              13:28717500 (GRCh38)
              13:29291637 (GRCh37)
              Canonical SPDI:
              NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:28717485:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
              Gene:
              SLC46A3 (Varview)
              Functional Consequence:
              intron_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              TTTTTTTTTTTTTTTTT=0./0 (ALFA)
              -=0.4844/279 (NorthernSweden)
              HGVS:
              NC_000013.11:g.28717500_28717510del, NC_000013.11:g.28717501_28717510del, NC_000013.11:g.28717502_28717510del, NC_000013.11:g.28717503_28717510del, NC_000013.11:g.28717504_28717510del, NC_000013.11:g.28717505_28717510del, NC_000013.11:g.28717506_28717510del, NC_000013.11:g.28717507_28717510del, NC_000013.11:g.28717509_28717510del, NC_000013.11:g.28717510del, NC_000013.11:g.28717510dup, NC_000013.11:g.28717509_28717510dup, NC_000013.11:g.28717505_28717510dup, NC_000013.11:g.28717504_28717510dup, NC_000013.11:g.28717503_28717510dup, NC_000013.11:g.28717498_28717510dup, NC_000013.11:g.28717510_28717511insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000013.11:g.28717510_28717511insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000013.10:g.29291637_29291647del, NC_000013.10:g.29291638_29291647del, NC_000013.10:g.29291639_29291647del, NC_000013.10:g.29291640_29291647del, NC_000013.10:g.29291641_29291647del, NC_000013.10:g.29291642_29291647del, NC_000013.10:g.29291643_29291647del, NC_000013.10:g.29291644_29291647del, NC_000013.10:g.29291646_29291647del, NC_000013.10:g.29291647del, NC_000013.10:g.29291647dup, NC_000013.10:g.29291646_29291647dup, NC_000013.10:g.29291642_29291647dup, NC_000013.10:g.29291641_29291647dup, NC_000013.10:g.29291640_29291647dup, NC_000013.10:g.29291635_29291647dup, NC_000013.10:g.29291647_29291648insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000013.10:g.29291647_29291648insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_053189.1:g.6518_6528del, NG_053189.1:g.6519_6528del, NG_053189.1:g.6520_6528del, NG_053189.1:g.6521_6528del, NG_053189.1:g.6522_6528del, NG_053189.1:g.6523_6528del, NG_053189.1:g.6524_6528del, NG_053189.1:g.6525_6528del, NG_053189.1:g.6527_6528del, NG_053189.1:g.6528del, NG_053189.1:g.6528dup, NG_053189.1:g.6527_6528dup, NG_053189.1:g.6523_6528dup, NG_053189.1:g.6522_6528dup, NG_053189.1:g.6521_6528dup, NG_053189.1:g.6516_6528dup, NG_053189.1:g.6528_6529insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NG_053189.1:g.6528_6529insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
              7.

              rs1491145280 [Homo sapiens]
                Variant type:
                DELINS
                Alleles:
                ->C [Show Flanks]
                Chromosome:
                13:28715977 (GRCh38)
                13:29290115 (GRCh37)
                Canonical SPDI:
                NC_000013.11:28715977:C:CC
                Gene:
                SLC46A3 (Varview)
                Functional Consequence:
                intron_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                CC=0./0 (ALFA)
                C=0.000008/2 (TOPMED)
                C=0.000025/1 (GnomAD)
                HGVS:
                8.

                rs1490989306 [Homo sapiens]
                  Variant type:
                  DEL
                  Alleles:
                  A>- [Show Flanks]
                  Chromosome:
                  13:28711859 (GRCh38)
                  13:29285996 (GRCh37)
                  Canonical SPDI:
                  NC_000013.11:28711858:A:
                  Gene:
                  SLC46A3 (Varview)
                  Functional Consequence:
                  intron_variant
                  Validated:
                  by frequency,by alfa,by cluster
                  MAF:
                  -=0.000071/1 (ALFA)
                  -=0.000043/6 (GnomAD)
                  -=0.000094/25 (TOPMED)
                  HGVS:
                  9.

                  rs1490503395 [Homo sapiens]
                    Variant type:
                    SNV
                    Alleles:
                    T>C [Show Flanks]
                    Chromosome:
                    13:28711409 (GRCh38)
                    13:29285546 (GRCh37)
                    Canonical SPDI:
                    NC_000013.11:28711408:T:C
                    Gene:
                    SLC46A3 (Varview)
                    Functional Consequence:
                    intron_variant
                    Validated:
                    by frequency,by alfa
                    MAF:
                    C=0./0 (ALFA)
                    C=0.000007/1 (GnomAD)
                    HGVS:
                    10.

                    rs1490206997 [Homo sapiens]
                      Variant type:
                      SNV
                      Alleles:
                      T>G [Show Flanks]
                      Chromosome:
                      13:28705141 (GRCh38)
                      13:29279278 (GRCh37)
                      Canonical SPDI:
                      NC_000013.11:28705140:T:G
                      Gene:
                      SLC46A3 (Varview), LOC124903143 (Varview)
                      Functional Consequence:
                      intron_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      G=0./0 (ALFA)
                      G=0.000004/1 (TOPMED)
                      HGVS:
                      11.

                      rs1489619674 [Homo sapiens]
                        Variant type:
                        DELINS
                        Alleles:
                        ->A [Show Flanks]
                        Chromosome:
                        13:28714132 (GRCh38)
                        13:29288270 (GRCh37)
                        Canonical SPDI:
                        NC_000013.11:28714132:AAAAAA:AAAAAAA
                        Gene:
                        SLC46A3 (Varview)
                        Functional Consequence:
                        intron_variant
                        Validated:
                        by frequency,by alfa
                        MAF:
                        AAAAAAA=0./0 (ALFA)
                        HGVS:
                        12.

                        rs1489619309 [Homo sapiens]
                          Variant type:
                          SNV
                          Alleles:
                          G>A [Show Flanks]
                          Chromosome:
                          13:28704565 (GRCh38)
                          13:29278702 (GRCh37)
                          Canonical SPDI:
                          NC_000013.11:28704564:G:A
                          Gene:
                          SLC46A3 (Varview), LOC124903143 (Varview)
                          Functional Consequence:
                          intron_variant,non_coding_transcript_variant
                          Validated:
                          by frequency,by alfa
                          MAF:
                          A=0./0 (ALFA)
                          A=0.000008/2 (TOPMED)
                          HGVS:
                          13.

                          rs1489528429 [Homo sapiens]
                            Variant type:
                            SNV
                            Alleles:
                            A>G [Show Flanks]
                            Chromosome:
                            13:28707143 (GRCh38)
                            13:29281280 (GRCh37)
                            Canonical SPDI:
                            NC_000013.11:28707142:A:G
                            Gene:
                            SLC46A3 (Varview), LOC124903143 (Varview)
                            Functional Consequence:
                            intron_variant,non_coding_transcript_variant
                            Validated:
                            by frequency,by alfa
                            MAF:
                            G=0./0 (ALFA)
                            G=0.000004/1 (TOPMED)
                            HGVS:
                            14.

                            rs1489467901 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              A>C [Show Flanks]
                              Chromosome:
                              13:28709089 (GRCh38)
                              13:29283226 (GRCh37)
                              Canonical SPDI:
                              NC_000013.11:28709088:A:C
                              Gene:
                              SLC46A3 (Varview)
                              Functional Consequence:
                              intron_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              C=0./0 (ALFA)
                              C=0.000004/1 (TOPMED)
                              C=0.000007/1 (GnomAD)
                              HGVS:
                              15.

                              rs1489271662 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                A>C [Show Flanks]
                                Chromosome:
                                13:28713015 (GRCh38)
                                13:29287152 (GRCh37)
                                Canonical SPDI:
                                NC_000013.11:28713014:A:C
                                Gene:
                                SLC46A3 (Varview)
                                Functional Consequence:
                                coding_sequence_variant,missense_variant
                                Validated:
                                by frequency
                                MAF:
                                C=0.000004/1 (GnomAD_exomes)
                                HGVS:
                                16.

                                rs1489169432 [Homo sapiens]
                                  Variant type:
                                  DEL
                                  Alleles:
                                  T>- [Show Flanks]
                                  Chromosome:
                                  13:28717873 (GRCh38)
                                  13:29292010 (GRCh37)
                                  Canonical SPDI:
                                  NC_000013.11:28717872:T:
                                  Gene:
                                  SLC46A3 (Varview)
                                  Functional Consequence:
                                  coding_sequence_variant,frameshift_variant
                                  Validated:
                                  by frequency
                                  MAF:
                                  -=0.000004/1 (GnomAD_exomes)
                                  HGVS:
                                  17.

                                  rs1488559745 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    C>G,T [Show Flanks]
                                    Chromosome:
                                    13:28718788 (GRCh38)
                                    13:29292925 (GRCh37)
                                    Canonical SPDI:
                                    NC_000013.11:28718787:C:G,NC_000013.11:28718787:C:T
                                    Gene:
                                    SLC46A3 (Varview)
                                    Functional Consequence:
                                    5_prime_UTR_variant
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    T=0.000142/2 (ALFA)
                                    T=0./0 (KOREAN)
                                    T=0.000043/6 (GnomAD)
                                    T=0.000098/26 (TOPMED)
                                    T=0.000468/3 (1000Genomes)
                                    HGVS:
                                    18.

                                    rs1488192983 [Homo sapiens]
                                      Variant type:
                                      SNV
                                      Alleles:
                                      G>T [Show Flanks]
                                      Chromosome:
                                      13:28719392 (GRCh38)
                                      13:29293529 (GRCh37)
                                      Canonical SPDI:
                                      NC_000013.11:28719391:G:T
                                      Gene:
                                      SLC46A3 (Varview)
                                      Functional Consequence:
                                      2KB_upstream_variant,upstream_transcript_variant
                                      Validated:
                                      by frequency,by alfa,by cluster
                                      MAF:
                                      T=0./0 (ALFA)
                                      T=0.000008/2 (TOPMED)
                                      T=0.000212/6 (TOMMO)
                                      T=0.000546/1 (Korea1K)
                                      HGVS:
                                      19.

                                      rs1488169514 [Homo sapiens]
                                        Variant type:
                                        SNV
                                        Alleles:
                                        A>G [Show Flanks]
                                        Chromosome:
                                        13:28714651 (GRCh38)
                                        13:29288788 (GRCh37)
                                        Canonical SPDI:
                                        NC_000013.11:28714650:A:G
                                        Gene:
                                        SLC46A3 (Varview)
                                        Functional Consequence:
                                        intron_variant
                                        Validated:
                                        by frequency,by alfa
                                        MAF:
                                        G=0./0 (ALFA)
                                        G=0.000007/1 (GnomAD)
                                        HGVS:
                                        20.

                                        rs1488121378 has merged into rs10594317 [Homo sapiens]
                                          Variant type:
                                          DELINS
                                          Alleles:
                                          AAAAAAAA>-,A,AA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
                                          Chromosome:
                                          13:28715989 (GRCh38)
                                          13:29290126 (GRCh37)
                                          Canonical SPDI:
                                          NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:28715978:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
                                          Gene:
                                          SLC46A3 (Varview)
                                          Functional Consequence:
                                          intron_variant
                                          Validated:
                                          by frequency,by alfa,by cluster
                                          MAF:
                                          AAAAAAAAAAA=0./0 (ALFA)
                                          A=0.1713/858 (1000Genomes)
                                          HGVS:
                                          NC_000013.11:g.28715989_28715996del, NC_000013.11:g.28715990_28715996del, NC_000013.11:g.28715991_28715996del, NC_000013.11:g.28715993_28715996del, NC_000013.11:g.28715994_28715996del, NC_000013.11:g.28715995_28715996del, NC_000013.11:g.28715996del, NC_000013.11:g.28715996dup, NC_000013.11:g.28715995_28715996dup, NC_000013.11:g.28715994_28715996dup, NC_000013.11:g.28715993_28715996dup, NC_000013.11:g.28715989_28715996dup, NC_000013.10:g.29290126_29290133del, NC_000013.10:g.29290127_29290133del, NC_000013.10:g.29290128_29290133del, NC_000013.10:g.29290130_29290133del, NC_000013.10:g.29290131_29290133del, NC_000013.10:g.29290132_29290133del, NC_000013.10:g.29290133del, NC_000013.10:g.29290133dup, NC_000013.10:g.29290132_29290133dup, NC_000013.10:g.29290131_29290133dup, NC_000013.10:g.29290130_29290133dup, NC_000013.10:g.29290126_29290133dup, NG_053189.1:g.8028_8035del, NG_053189.1:g.8029_8035del, NG_053189.1:g.8030_8035del, NG_053189.1:g.8032_8035del, NG_053189.1:g.8033_8035del, NG_053189.1:g.8034_8035del, NG_053189.1:g.8035del, NG_053189.1:g.8035dup, NG_053189.1:g.8034_8035dup, NG_053189.1:g.8033_8035dup, NG_053189.1:g.8032_8035dup, NG_053189.1:g.8028_8035dup

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