SNP Links for Gene (Select 283267) - SNP

Links from Gene

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Select item 14900803101.

rs1490080310 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:33078302 (GRCh38)
11:33099848 (GRCh37)
Canonical SPDI:: NC_000011.10:33078301:C:T
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000011.10:g.33078302C>T, NC_000011.9:g.33099848C>T, NR_015451.1:n.2153C>T

Select item 14888921432.

rs1488892143 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:33075770 (GRCh38)
11:33097316 (GRCh37)
Canonical SPDI:: NC_000011.10:33075769:C:T
Gene:: LINC00294 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.33075770C>T, NC_000011.9:g.33097316C>T, NG_001175.5:g.1049G>A

Select item 14887913993.

rs1488791399 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:33076718 (GRCh38)
11:33098264 (GRCh37)
Canonical SPDI:: NC_000011.10:33076717:C:T
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000015/2 (GnomAD)
HGVS:: NC_000011.10:g.33076718C>T, NC_000011.9:g.33098264C>T, NG_001175.5:g.101G>A, NR_015451.1:n.569C>T

Select item 14885532044.

rs1488553204 [Homo sapiens]

Variant type:: DEL
Alleles:: GTG>- [Show Flanks]
Chromosome:: 11:33076181 (GRCh38)
11:33097727 (GRCh37)
Canonical SPDI:: NC_000011.10:33076180:GTG:
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000036/5 (GnomAD)
HGVS:: NC_000011.10:g.33076181_33076183del, NC_000011.9:g.33097727_33097729del, NG_001175.5:g.636_638del, NR_015451.1:n.32_34del

Select item 14885277485.

rs1488527748 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 11:33075421 (GRCh38)
11:33096967 (GRCh37)
Canonical SPDI:: NC_000011.10:33075420:GG:G
Gene:: LINC00294 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0.00027/5 (ALFA)
-=0.000042/11 (TOPMED)
-=0.000107/15 (GnomAD)
-=0.001116/5 (Estonian)
HGVS:: NC_000011.10:g.33075422del, NC_000011.9:g.33096968del, NG_001175.5:g.1398del

Select item 14885167586.

rs1488516758 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 11:33077214 (GRCh38)
11:33098760 (GRCh37)
Canonical SPDI:: NC_000011.10:33077213:GG:G
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.33077215del, NC_000011.9:g.33098761del, NR_015451.1:n.1066del

Select item 14876586377.

rs1487658637 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:33078966 (GRCh38)
11:33100512 (GRCh37)
Canonical SPDI:: NC_000011.10:33078965:T:C
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.33078966T>C, NC_000011.9:g.33100512T>C, NR_015451.1:n.2817T>C

Select item 14876270108.

rs1487627010 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:33077884 (GRCh38)
11:33099430 (GRCh37)
Canonical SPDI:: NC_000011.10:33077883:A:G
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.33077884A>G, NC_000011.9:g.33099430A>G, NR_015451.1:n.1735A>G

Select item 14871539179.

rs1487153917 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:33076254 (GRCh38)
11:33097800 (GRCh37)
Canonical SPDI:: NC_000011.10:33076253:C:T
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000106/2 (TOMMO)
T=0.000342/1 (KOREAN)
T=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.33076254C>T, NC_000011.9:g.33097800C>T, NG_001175.5:g.565G>A, NR_015451.1:n.105C>T

Select item 148690994210.

rs1486909942 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:33074906 (GRCh38)
11:33096452 (GRCh37)
Canonical SPDI:: NC_000011.10:33074905:C:G,NC_000011.10:33074905:C:T
Gene:: LINC00294 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000011.10:g.33074906C>G, NC_000011.10:g.33074906C>T, NC_000011.9:g.33096452C>G, NC_000011.9:g.33096452C>T

Select item 148609613411.

rs1486096134 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:33077790 (GRCh38)
11:33099336 (GRCh37)
Canonical SPDI:: NC_000011.10:33077789:C:T
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000128/18 (GnomAD)
HGVS:: NC_000011.10:g.33077790C>T, NC_000011.9:g.33099336C>T, NR_015451.1:n.1641C>T

Select item 148573857212.

rs1485738572 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:33077532 (GRCh38)
11:33099078 (GRCh37)
Canonical SPDI:: NC_000011.10:33077531:A:G,NC_000011.10:33077531:A:T
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.33077532A>G, NC_000011.10:g.33077532A>T, NC_000011.9:g.33099078A>G, NC_000011.9:g.33099078A>T, NR_015451.1:n.1383A>G, NR_015451.1:n.1383A>T

Select item 148567806113.

rs1485678061 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:33077982 (GRCh38)
11:33099528 (GRCh37)
Canonical SPDI:: NC_000011.10:33077981:T:C
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.33077982T>C, NC_000011.9:g.33099528T>C, NR_015451.1:n.1833T>C

Select item 148566318714.

rs1485663187 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:33077011 (GRCh38)
11:33098557 (GRCh37)
Canonical SPDI:: NC_000011.10:33077010:A:C
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.33077011A>C, NC_000011.9:g.33098557A>C, NR_015451.1:n.862A>C

Select item 148464752215.

rs1484647522 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TGAG [Show Flanks]
Chromosome:: 11:33074157 (GRCh38)
11:33095704 (GRCh37)
Canonical SPDI:: NC_000011.10:33074157:AGTGAG:AGTGAGTGAG
Gene:: LINC00294 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AGTGAGTGAG=0./0 (ALFA)
AGTG=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.33074160_33074163dup, NC_000011.9:g.33095706_33095709dup

Select item 148446262416.

rs1484462624 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:33076873 (GRCh38)
11:33098419 (GRCh37)
Canonical SPDI:: NC_000011.10:33076872:G:A
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000057/15 (TOPMED)
HGVS:: NC_000011.10:g.33076873G>A, NC_000011.9:g.33098419G>A, NR_015451.1:n.724G>A

Select item 148417049617.

rs1484170496 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:33074793 (GRCh38)
11:33096339 (GRCh37)
Canonical SPDI:: NC_000011.10:33074792:T:C
Gene:: LINC00294 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.33074793T>C, NC_000011.9:g.33096339T>C

Select item 148413789118.

rs1484137891 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 11:33076150 (GRCh38)
11:33097696 (GRCh37)
Canonical SPDI:: NC_000011.10:33076149:T:A,NC_000011.10:33076149:T:C
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.33076150T>A, NC_000011.10:g.33076150T>C, NC_000011.9:g.33097696T>A, NC_000011.9:g.33097696T>C, NG_001175.5:g.669A>T, NG_001175.5:g.669A>G, NR_015451.1:n.1T>A, NR_015451.1:n.1T>C

Select item 148388790419.

rs1483887904 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:33079118 (GRCh38)
11:33100664 (GRCh37)
Canonical SPDI:: NC_000011.10:33079117:G:A
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.33079118G>A, NC_000011.9:g.33100664G>A, NR_015451.1:n.2969G>A

Select item 148368605220.

rs1483686052 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:33076366 (GRCh38)
11:33097912 (GRCh37)
Canonical SPDI:: NC_000011.10:33076365:C:T
Gene:: LINC00294 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.33076366C>T, NC_000011.9:g.33097912C>T, NG_001175.5:g.453G>A, NR_015451.1:n.217C>T

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