Links from Gene
Items: 1 to 20 of 11535
1.
rs1491571578 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->CT
[Show Flanks]
- Chromosome:
- 11:74303293
(GRCh38)
11:74014339
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74303293:T:TCT
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
TCT=0./0
(
ALFA)
TC=0.00002/1
(GnomAD)
- HGVS:
3.
rs1491341710 has merged into rs36086552 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 11:74288963
(GRCh38)
11:74000008
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAAAAAA=0./0
(
ALFA)
-=0.3844/1925
(1000Genomes)
- HGVS:
NC_000011.10:g.74288963_74288966del, NC_000011.10:g.74288964_74288966del, NC_000011.10:g.74288965_74288966del, NC_000011.10:g.74288966del, NC_000011.10:g.74288966dup, NC_000011.10:g.74288965_74288966dup, NC_000011.10:g.74288964_74288966dup, NC_000011.10:g.74288963_74288966dup, NC_000011.10:g.74288962_74288966dup, NC_000011.10:g.74288957_74288966dup, NC_000011.10:g.74288955_74288966dup, NC_000011.9:g.74000008_74000011del, NC_000011.9:g.74000009_74000011del, NC_000011.9:g.74000010_74000011del, NC_000011.9:g.74000011del, NC_000011.9:g.74000011dup, NC_000011.9:g.74000010_74000011dup, NC_000011.9:g.74000009_74000011dup, NC_000011.9:g.74000008_74000011dup, NC_000011.9:g.74000007_74000011dup, NC_000011.9:g.74000002_74000011dup, NC_000011.9:g.74000000_74000011dup
6.
rs1491221090 has merged into rs36086552 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 11:74288963
(GRCh38)
11:74000008
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:74288948:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAAAAAA=0./0
(
ALFA)
-=0.3844/1925
(1000Genomes)
- HGVS:
NC_000011.10:g.74288963_74288966del, NC_000011.10:g.74288964_74288966del, NC_000011.10:g.74288965_74288966del, NC_000011.10:g.74288966del, NC_000011.10:g.74288966dup, NC_000011.10:g.74288965_74288966dup, NC_000011.10:g.74288964_74288966dup, NC_000011.10:g.74288963_74288966dup, NC_000011.10:g.74288962_74288966dup, NC_000011.10:g.74288957_74288966dup, NC_000011.10:g.74288955_74288966dup, NC_000011.9:g.74000008_74000011del, NC_000011.9:g.74000009_74000011del, NC_000011.9:g.74000010_74000011del, NC_000011.9:g.74000011del, NC_000011.9:g.74000011dup, NC_000011.9:g.74000010_74000011dup, NC_000011.9:g.74000009_74000011dup, NC_000011.9:g.74000008_74000011dup, NC_000011.9:g.74000007_74000011dup, NC_000011.9:g.74000002_74000011dup, NC_000011.9:g.74000000_74000011dup
7.
rs1491193613 has merged into rs61624292 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 11:74299680
(GRCh38)
11:74010725
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:74299667:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAA=0./0
(
ALFA)
-=0.3391/1698
(1000Genomes)
- HGVS:
NC_000011.10:g.74299680_74299683del, NC_000011.10:g.74299681_74299683del, NC_000011.10:g.74299682_74299683del, NC_000011.10:g.74299683del, NC_000011.10:g.74299683dup, NC_000011.10:g.74299682_74299683dup, NC_000011.10:g.74299681_74299683dup, NC_000011.10:g.74299674_74299683dup, NC_000011.9:g.74010725_74010728del, NC_000011.9:g.74010726_74010728del, NC_000011.9:g.74010727_74010728del, NC_000011.9:g.74010728del, NC_000011.9:g.74010728dup, NC_000011.9:g.74010727_74010728dup, NC_000011.9:g.74010726_74010728dup, NC_000011.9:g.74010719_74010728dup
8.
rs1491121258 has merged into rs779313817 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTT>-,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 11:74303302
(GRCh38)
11:74014347
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:74303292:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTT=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS:
NC_000011.10:g.74303302_74303312del, NC_000011.10:g.74303304_74303312del, NC_000011.10:g.74303305_74303312del, NC_000011.10:g.74303306_74303312del, NC_000011.10:g.74303307_74303312del, NC_000011.10:g.74303308_74303312del, NC_000011.10:g.74303309_74303312del, NC_000011.10:g.74303310_74303312del, NC_000011.10:g.74303311_74303312del, NC_000011.10:g.74303312del, NC_000011.10:g.74303312dup, NC_000011.10:g.74303311_74303312dup, NC_000011.10:g.74303310_74303312dup, NC_000011.10:g.74303309_74303312dup, NC_000011.10:g.74303308_74303312dup, NC_000011.10:g.74303307_74303312dup, NC_000011.10:g.74303305_74303312dup, NC_000011.9:g.74014347_74014357del, NC_000011.9:g.74014349_74014357del, NC_000011.9:g.74014350_74014357del, NC_000011.9:g.74014351_74014357del, NC_000011.9:g.74014352_74014357del, NC_000011.9:g.74014353_74014357del, NC_000011.9:g.74014354_74014357del, NC_000011.9:g.74014355_74014357del, NC_000011.9:g.74014356_74014357del, NC_000011.9:g.74014357del, NC_000011.9:g.74014357dup, NC_000011.9:g.74014356_74014357dup, NC_000011.9:g.74014355_74014357dup, NC_000011.9:g.74014354_74014357dup, NC_000011.9:g.74014353_74014357dup, NC_000011.9:g.74014352_74014357dup, NC_000011.9:g.74014350_74014357dup
9.
rs1490935074 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 11:74276190
(GRCh38)
11:73987235
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74276189:C:T
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000035/1
(TOMMO)
- HGVS:
11.
rs1490595008 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 11:74302423
(GRCh38)
11:74013468
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74302422:G:C
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,coding_sequence_variant,stop_gained
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(GnomAD_exomes)
C=0.000007/1
(GnomAD)
- HGVS:
NC_000011.10:g.74302423G>C, NC_000011.9:g.74013468G>C, NM_182904.5:c.513C>G, NM_182904.4:c.513C>G, NM_182904.3:c.513C>G, XR_001747836.2:n.542C>G, XR_001747836.1:n.556C>G, XR_001747838.2:n.542C>G, XR_001747838.1:n.556C>G, NM_001288748.2:c.513C>G, NM_001288748.1:c.513C>G, XR_001747837.2:n.542C>G, XR_001747837.1:n.556C>G, NR_110031.2:n.508C>G, NR_110031.1:n.544C>G, XR_007062475.1:n.542C>G, XM_047426802.1:c.513C>G, NP_878907.1:p.Tyr171Ter, NP_001275677.1:p.Tyr171Ter, XP_047282758.1:p.Tyr171Ter
12.
rs1490586621 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- C>-
[Show Flanks]
- Chromosome:
- 11:74266604
(GRCh38)
11:73977649
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74266603:CCC:CC
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- downstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
CC=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS:
13.
rs1490564235 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C,T
[Show Flanks]
- Chromosome:
- 11:74282131
(GRCh38)
11:73993176
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74282130:A:C,NC_000011.10:74282130:A:T
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.00002/2
(GnomAD)
C=0.00004/1
(TOMMO)
- HGVS:
14.
rs1490563841 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 11:74290976
(GRCh38)
11:74002021
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74290975:G:A
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
15.
rs1490500191 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 11:74273768
(GRCh38)
11:73984813
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74273767:G:A
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000015/4
(TOPMED)
- HGVS:
16.
rs1490292069 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 11:74298092
(GRCh38)
11:74009137
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74298091:G:A,NC_000011.10:74298091:G:T
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
17.
rs1490282119 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 11:74311456
(GRCh38)
11:74022501
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74311455:C:G,NC_000011.10:74311455:C:T
- Gene:
- P4HA3 (Varview), P4HA3-AS1 (Varview)
- Functional Consequence:
- coding_sequence_variant,non_coding_transcript_variant,intron_variant,missense_variant,synonymous_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
NC_000011.10:g.74311456C>G, NC_000011.10:g.74311456C>T, NC_000011.9:g.74022501C>G, NC_000011.9:g.74022501C>T, NM_182904.5:c.156G>C, NM_182904.5:c.156G>A, NM_182904.4:c.156G>C, NM_182904.4:c.156G>A, NM_182904.3:c.156G>C, NM_182904.3:c.156G>A, XR_001747836.2:n.185G>C, XR_001747836.2:n.185G>A, XR_001747836.1:n.199G>C, XR_001747836.1:n.199G>A, XR_001747838.2:n.185G>C, XR_001747838.2:n.185G>A, XR_001747838.1:n.199G>C, XR_001747838.1:n.199G>A, NM_001288748.2:c.156G>C, NM_001288748.2:c.156G>A, NM_001288748.1:c.156G>C, NM_001288748.1:c.156G>A, XR_001747837.2:n.185G>C, XR_001747837.2:n.185G>A, XR_001747837.1:n.199G>C, XR_001747837.1:n.199G>A, NR_110031.2:n.185G>C, NR_110031.2:n.185G>A, NR_110031.1:n.221G>C, NR_110031.1:n.221G>A, XR_007062475.1:n.185G>C, XR_007062475.1:n.185G>A, XM_047426802.1:c.156G>C, XM_047426802.1:c.156G>A, NP_878907.1:p.Arg52Ser, NP_001275677.1:p.Arg52Ser, XP_047282758.1:p.Arg52Ser
18.
rs1490230614 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 11:74302319
(GRCh38)
11:74013364
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74302318:T:C
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000005/1
(GnomAD_exomes)
C=0.000008/2
(TOPMED)
C=0.000014/2
(GnomAD)
- HGVS:
19.
rs1490127855 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 11:74265098
(GRCh38)
11:73976143
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74265097:T:C
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000008/2
(TOPMED)
C=0.000014/2
(GnomAD)
- HGVS:
20.
rs1490097383 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TGG>-
[Show Flanks]
- Chromosome:
- 11:74266111
(GRCh38)
11:73977156
(GRCh37)
- Canonical SPDI:
- NC_000011.10:74266109:GTGG:G
- Gene:
- P4HA3 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS: