SNP Links for Gene (Select 283102) - SNP

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Select item 14910404221.

rs1491040422 has merged into rs386373060 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,T,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 11:9096157 (GRCh38)
11:9117704 (GRCh37)
Canonical SPDI:: NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:9096146:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
-=0.1939/971 (1000Genomes)
HGVS:: NC_000011.10:g.9096157_9096164del, NC_000011.10:g.9096158_9096164del, NC_000011.10:g.9096160_9096164del, NC_000011.10:g.9096161_9096164del, NC_000011.10:g.9096162_9096164del, NC_000011.10:g.9096163_9096164del, NC_000011.10:g.9096164del, NC_000011.10:g.9096164dup, NC_000011.10:g.9096163_9096164dup, NC_000011.10:g.9096162_9096164dup, NC_000011.10:g.9096161_9096164dup, NC_000011.10:g.9096164_9096165insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000011.9:g.9117704_9117711del, NC_000011.9:g.9117705_9117711del, NC_000011.9:g.9117707_9117711del, NC_000011.9:g.9117708_9117711del, NC_000011.9:g.9117709_9117711del, NC_000011.9:g.9117710_9117711del, NC_000011.9:g.9117711del, NC_000011.9:g.9117711dup, NC_000011.9:g.9117710_9117711dup, NC_000011.9:g.9117709_9117711dup, NC_000011.9:g.9117708_9117711dup, NC_000011.9:g.9117711_9117712insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NR_027713.1:n.1795_1802del, NR_027713.1:n.1796_1802del, NR_027713.1:n.1798_1802del, NR_027713.1:n.1799_1802del, NR_027713.1:n.1800_1802del, NR_027713.1:n.1801_1802del, NR_027713.1:n.1802del, NR_027713.1:n.1802dup, NR_027713.1:n.1801_1802dup, NR_027713.1:n.1800_1802dup, NR_027713.1:n.1799_1802dup, NR_027713.1:n.1802_1803insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NM_198473.1:c.*471_*473dup, NM_198473.1:c.*469_*473del, NM_198473.1:c.*470_*473del, NM_198473.1:c.*472_*473del, NM_198473.1:c.*473del, NM_198473.1:c.*473dup, NM_198473.1:c.*472_*473dup, NM_198473.1:c.*470_*473dup, NM_198473.1:c.*469_*473dup, NM_198473.1:c.*468_*473dup, NM_198473.1:c.*467_*473dup, NM_198473.1:c.*473_*474insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14902421972.

rs1490242197 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:9096442 (GRCh38)
11:9117989 (GRCh37)
Canonical SPDI:: NC_000011.10:9096441:T:C
Gene:: KRT8P41 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.9096442T>C, NC_000011.9:g.9117989T>C

Select item 14899340363.

rs1489934036 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9092445 (GRCh38)
11:9113992 (GRCh37)
Canonical SPDI:: NC_000011.10:9092444:G:A
Gene:: SCUBE2 (Varview), KRT8P41 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000011.10:g.9092445G>A, NC_000011.9:g.9113992G>A

Select item 14895113534.

rs1489511353 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:9096638 (GRCh38)
11:9118185 (GRCh37)
Canonical SPDI:: NC_000011.10:9096637:C:T
Gene:: KRT8P41 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000035/1 (TOMMO)
T=0.000038/10 (TOPMED)
HGVS:: NC_000011.10:g.9096638C>T, NC_000011.9:g.9118185C>T

Select item 14894590915.

rs1489459091 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:9094422 (GRCh38)
11:9115969 (GRCh37)
Canonical SPDI:: NC_000011.10:9094421:C:G,NC_000011.10:9094421:C:T
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.9094422C>G, NC_000011.10:g.9094422C>T, NC_000011.9:g.9115969C>G, NC_000011.9:g.9115969C>T, NR_027713.1:n.60C>G, NR_027713.1:n.60C>T, NM_198473.1:c.-673C>G, NM_198473.1:c.-673C>T

Select item 14894056376.

rs1489405637 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:9095493 (GRCh38)
11:9117040 (GRCh37)
Canonical SPDI:: NC_000011.10:9095492:T:C
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.000106/2 (TOMMO)
C=0.000342/1 (KOREAN)
C=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.9095493T>C, NC_000011.9:g.9117040T>C, NR_027713.1:n.1131T>C, NM_198473.1:c.399T>C

Select item 14892852497.

rs1489285249 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:9092470 (GRCh38)
11:9114017 (GRCh37)
Canonical SPDI:: NC_000011.10:9092469:A:G
Gene:: SCUBE2 (Varview), KRT8P41 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.9092470A>G, NC_000011.9:g.9114017A>G

Select item 14888296468.

rs1488829646 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:9096317 (GRCh38)
11:9117864 (GRCh37)
Canonical SPDI:: NC_000011.10:9096316:C:T
Gene:: KRT8P41 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
HGVS:: NC_000011.10:g.9096317C>T, NC_000011.9:g.9117864C>T

Select item 14886396559.

rs1488639655 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 11:9095893 (GRCh38)
11:9117440 (GRCh37)
Canonical SPDI:: NC_000011.10:9095892:AAA:AA
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000015/4 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.9095895del, NC_000011.9:g.9117442del, NR_027713.1:n.1533del, NM_198473.1:c.*207del

Select item 148744155710.

rs1487441557 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 11:9094570 (GRCh38)
11:9116117 (GRCh37)
Canonical SPDI:: NC_000011.10:9094569:C:
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.9094570del, NC_000011.9:g.9116117del, NR_027713.1:n.208del, NM_198473.1:c.-525del

Select item 148716794711.

rs1487167947 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9095466 (GRCh38)
11:9117013 (GRCh37)
Canonical SPDI:: NC_000011.10:9095465:G:A
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.9095466G>A, NC_000011.9:g.9117013G>A, NR_027713.1:n.1104G>A, NM_198473.1:c.372G>A

Select item 148713771812.

rs1487137718 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 11:9094099 (GRCh38)
11:9115646 (GRCh37)
Canonical SPDI:: NC_000011.10:9094096:TCTC:TC
Gene:: KRT8P41 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TCTC=0.000071/1 (ALFA)
-=0.000068/18 (TOPMED)
HGVS:: NC_000011.10:g.9094097TC[1], NC_000011.9:g.9115644TC[1]

Select item 148708701413.

rs1487087014 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9095181 (GRCh38)
11:9116728 (GRCh37)
Canonical SPDI:: NC_000011.10:9095180:G:A
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.9095181G>A, NC_000011.9:g.9116728G>A, NR_027713.1:n.819G>A, NM_198473.1:c.87G>A

Select item 148668239814.

rs1486682398 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9095083 (GRCh38)
11:9116630 (GRCh37)
Canonical SPDI:: NC_000011.10:9095082:G:A
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.9095083G>A, NC_000011.9:g.9116630G>A, NR_027713.1:n.721G>A, NM_198473.1:c.-12G>A

Select item 148357686215.

rs1483576862 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:9092366 (GRCh38)
11:9113913 (GRCh37)
Canonical SPDI:: NC_000011.10:9092365:C:T
Gene:: SCUBE2 (Varview), KRT8P41 (Varview), MIR5691 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.9092366C>T, NC_000011.9:g.9113913C>T

Select item 148237133416.

rs1482371334 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:9093859 (GRCh38)
11:9115406 (GRCh37)
Canonical SPDI:: NC_000011.10:9093858:T:C,NC_000011.10:9093858:T:G
Gene:: KRT8P41 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (KOREAN)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.9093859T>C, NC_000011.10:g.9093859T>G, NC_000011.9:g.9115406T>C, NC_000011.9:g.9115406T>G

Select item 148052031817.

rs1480520318 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:9092478 (GRCh38)
11:9114025 (GRCh37)
Canonical SPDI:: NC_000011.10:9092477:C:T
Gene:: SCUBE2 (Varview), KRT8P41 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.9092478C>T, NC_000011.9:g.9114025C>T

Select item 148004568518.

rs1480045685 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9095497 (GRCh38)
11:9117044 (GRCh37)
Canonical SPDI:: NC_000011.10:9095496:G:A
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.9095497G>A, NC_000011.9:g.9117044G>A, NR_027713.1:n.1135G>A, NM_198473.1:c.403G>A

Select item 147905209919.

rs1479052099 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:9096433 (GRCh38)
11:9117980 (GRCh37)
Canonical SPDI:: NC_000011.10:9096432:C:T
Gene:: KRT8P41 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.9096433C>T, NC_000011.9:g.9117980C>T

Select item 147863703320.

rs1478637033 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:9096089 (GRCh38)
11:9117636 (GRCh37)
Canonical SPDI:: NC_000011.10:9096088:A:G
Gene:: KRT8P41 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.9096089A>G, NC_000011.9:g.9117636A>G, NR_027713.1:n.1727A>G, NM_198473.1:c.*401A>G