SNP Links for Gene (Select 282706) - SNP

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Items: 1 to 20 of 12148

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Select item 14915806721.

rs1491580672 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 13:105467730 (GRCh38)
13:106120080 (GRCh37)
Canonical SPDI:: NC_000013.11:105467730::G
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.0002/8 (GnomAD)
HGVS:: NC_000013.11:g.105467730_105467731insG, NC_000013.10:g.106120079_106120080insG, NG_012694.1:g.6864_6865insG

Select item 14915771522.

rs1491577152 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 13:105487603 (GRCh38)
13:106139953 (GRCh37)
Canonical SPDI:: NC_000013.11:105487603::G
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105487603_105487604insG, NC_000013.10:g.106139952_106139953insG, NG_012694.1:g.26737_26738insG

Select item 14915551973.

rs1491555197 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTT,TTTT,TTTTTT [Show Flanks]
Chromosome:: 13:105486629 (GRCh38)
13:106138978 (GRCh37)
Canonical SPDI:: NC_000013.11:105486621:TTTTTTTTT:TTTTTTT,NC_000013.11:105486621:TTTTTTTTT:TTTTTTTTTT,NC_000013.11:105486621:TTTTTTTTT:TTTTTTTTTTT,NC_000013.11:105486621:TTTTTTTTT:TTTTTTTTTTTTT
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
-=0.00006/1 (TOMMO)
HGVS:: NC_000013.11:g.105486629_105486630del, NC_000013.11:g.105486630dup, NC_000013.11:g.105486629_105486630dup, NC_000013.11:g.105486627_105486630dup, NC_000013.10:g.106138978_106138979del, NC_000013.10:g.106138979dup, NC_000013.10:g.106138978_106138979dup, NC_000013.10:g.106138976_106138979dup, NG_012694.1:g.25763_25764del, NG_012694.1:g.25764dup, NG_012694.1:g.25763_25764dup, NG_012694.1:g.25761_25764dup

Select item 14913976254.

rs1491397625 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 13:105498772 (GRCh38)
13:106151121 (GRCh37)
Canonical SPDI:: NC_000013.11:105498771:GA:
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000013.11:g.105498772_105498773del, NC_000013.10:g.106151121_106151122del

Select item 14913806335.

rs1491380633 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 13:105473179 (GRCh38)
13:106125528 (GRCh37)
Canonical SPDI:: NC_000013.11:105473177:TTT:T
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000029/4 (GnomAD)
HGVS:: NC_000013.11:g.105473179_105473180del, NC_000013.10:g.106125528_106125529del, NG_012694.1:g.12313_12314del

Select item 14910670356.

rs1491067035 has merged into rs11441420 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,A,AAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 13:105502579 (GRCh38)
13:106154928 (GRCh37)
Canonical SPDI:: NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:105502566:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000013.11:g.105502579_105502585del, NC_000013.11:g.105502580_105502585del, NC_000013.11:g.105502582_105502585del, NC_000013.11:g.105502584_105502585del, NC_000013.11:g.105502585del, NC_000013.11:g.105502585dup, NC_000013.11:g.105502584_105502585dup, NC_000013.11:g.105502583_105502585dup, NC_000013.11:g.105502582_105502585dup, NC_000013.11:g.105502581_105502585dup, NC_000013.11:g.105502580_105502585dup, NC_000013.11:g.105502579_105502585dup, NC_000013.11:g.105502578_105502585dup, NC_000013.11:g.105502577_105502585dup, NC_000013.10:g.106154928_106154934del, NC_000013.10:g.106154929_106154934del, NC_000013.10:g.106154931_106154934del, NC_000013.10:g.106154933_106154934del, NC_000013.10:g.106154934del, NC_000013.10:g.106154934dup, NC_000013.10:g.106154933_106154934dup, NC_000013.10:g.106154932_106154934dup, NC_000013.10:g.106154931_106154934dup, NC_000013.10:g.106154930_106154934dup, NC_000013.10:g.106154929_106154934dup, NC_000013.10:g.106154928_106154934dup, NC_000013.10:g.106154927_106154934dup, NC_000013.10:g.106154926_106154934dup

Select item 14910523737.

rs1491052373 has merged into rs71114923 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,T,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 13:105467591 (GRCh38)
13:106119940 (GRCh37)
Canonical SPDI:: NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:105467583:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000013.11:g.105467591_105467599del, NC_000013.11:g.105467592_105467599del, NC_000013.11:g.105467597_105467599del, NC_000013.11:g.105467598_105467599del, NC_000013.11:g.105467599del, NC_000013.11:g.105467599dup, NC_000013.11:g.105467598_105467599dup, NC_000013.11:g.105467597_105467599dup, NC_000013.11:g.105467595_105467599dup, NC_000013.11:g.105467593_105467599dup, NC_000013.11:g.105467592_105467599dup, NC_000013.11:g.105467590_105467599dup, NC_000013.10:g.106119940_106119948del, NC_000013.10:g.106119941_106119948del, NC_000013.10:g.106119946_106119948del, NC_000013.10:g.106119947_106119948del, NC_000013.10:g.106119948del, NC_000013.10:g.106119948dup, NC_000013.10:g.106119947_106119948dup, NC_000013.10:g.106119946_106119948dup, NC_000013.10:g.106119944_106119948dup, NC_000013.10:g.106119942_106119948dup, NC_000013.10:g.106119941_106119948dup, NC_000013.10:g.106119939_106119948dup, NG_012694.1:g.6725_6733del, NG_012694.1:g.6726_6733del, NG_012694.1:g.6731_6733del, NG_012694.1:g.6732_6733del, NG_012694.1:g.6733del, NG_012694.1:g.6733dup, NG_012694.1:g.6732_6733dup, NG_012694.1:g.6731_6733dup, NG_012694.1:g.6729_6733dup, NG_012694.1:g.6727_6733dup, NG_012694.1:g.6726_6733dup, NG_012694.1:g.6724_6733dup

Select item 14910080208.

rs1491008020 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: 13:105498788 (GRCh38)
13:106151138 (GRCh37)
Canonical SPDI:: NC_000013.11:105498788:ACA:ACACA
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACA=0./0 (ALFA)
AC=0.000004/1 (TOPMED)
AC=0.000008/1 (GnomAD)
HGVS:: NC_000013.11:g.105498790_105498791dup, NC_000013.10:g.106151139_106151140dup

Select item 14909892379.

rs1490989237 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:105477954 (GRCh38)
13:106130303 (GRCh37)
Canonical SPDI:: NC_000013.11:105477953:T:G
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105477954T>G, NC_000013.10:g.106130303T>G, NG_012694.1:g.17088T>G

Select item 149090736610.

rs1490907366 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:105489942 (GRCh38)
13:106142291 (GRCh37)
Canonical SPDI:: NC_000013.11:105489941:C:A
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: coding_sequence_variant,non_coding_transcript_variant,missense_variant,3_prime_UTR_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000013.11:g.105489942C>A, NC_000013.10:g.106142291C>A, NG_012694.1:g.29076C>A, NM_172370.5:c.323C>A, NM_172370.4:c.323C>A, NM_001384644.1:c.*36C>A, NM_001161814.1:c.110C>A, NM_001384646.1:c.110C>A, NM_001384645.1:c.116C>A, NM_001161812.1:c.239C>A, NR_040247.1:n.339G>T, NM_172368.1:c.-20G>T, NP_758958.3:p.Ala108Glu, NP_001155286.1:p.Ala37Glu, NP_001371575.1:p.Ala37Glu, NP_001371574.1:p.Ala39Glu, NP_001155284.1:p.Ala80Glu

Select item 149086252611.

rs1490862526 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAG>- [Show Flanks]
Chromosome:: 13:105503588 (GRCh38)
13:106155937 (GRCh37)
Canonical SPDI:: NC_000013.11:105503584:CAGCAG:CAG
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CAGCAG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.105503585CAG[1], NC_000013.10:g.106155934CAG[1]

Select item 149084438912.

rs1490844389 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:105500992 (GRCh38)
13:106153341 (GRCh37)
Canonical SPDI:: NC_000013.11:105500991:T:C
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105500992T>C, NC_000013.10:g.106153341T>C

Select item 149070224913.

rs1490702249 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:105484034 (GRCh38)
13:106136383 (GRCh37)
Canonical SPDI:: NC_000013.11:105484033:A:G
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.105484034A>G, NC_000013.10:g.106136383A>G, NG_012694.1:g.23168A>G

Select item 149066927714.

rs1490669277 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:105487915 (GRCh38)
13:106140264 (GRCh37)
Canonical SPDI:: NC_000013.11:105487914:G:T
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105487915G>T, NC_000013.10:g.106140264G>T, NG_012694.1:g.27049G>T

Select item 149062569715.

rs1490625697 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:105485944 (GRCh38)
13:106138293 (GRCh37)
Canonical SPDI:: NC_000013.11:105485943:T:C
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000013.11:g.105485944T>C, NC_000013.10:g.106138293T>C, NG_012694.1:g.25078T>C

Select item 149060214716.

rs1490602147 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 13:105497927 (GRCh38)
13:106150276 (GRCh37)
Canonical SPDI:: NC_000013.11:105497926:TT:T
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105497928del, NC_000013.10:g.106150277del

Select item 149055352417.

rs1490553524 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:105464586 (GRCh38)
13:106116935 (GRCh37)
Canonical SPDI:: NC_000013.11:105464585:G:C
Gene:: DAOA (Varview), DAOA-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105464586G>C, NC_000013.10:g.106116935G>C, NG_012694.1:g.3720G>C

Select item 149052778318.

rs1490527783 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:105463614 (GRCh38)
13:106115963 (GRCh37)
Canonical SPDI:: NC_000013.11:105463613:A:G
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.105463614A>G, NC_000013.10:g.106115963A>G, NG_012694.1:g.2748A>G

Select item 149036546719.

rs1490365467 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 13:105505002 (GRCh38)
13:106157351 (GRCh37)
Canonical SPDI:: NC_000013.11:105505001:C:A,NC_000013.11:105505001:C:T
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105505002C>A, NC_000013.11:g.105505002C>T, NC_000013.10:g.106157351C>A, NC_000013.10:g.106157351C>T

Select item 149034906820.

rs1490349068 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:105496271 (GRCh38)
13:106148620 (GRCh37)
Canonical SPDI:: NC_000013.11:105496270:C:A
Gene:: DAOA-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.105496271C>A, NC_000013.10:g.106148620C>A

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