SNP Links for Gene (Select 26248) - SNP

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Select item 14908565571.

rs1490856557 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 9:111327247 (GRCh38)
9:114089527 (GRCh37)
Canonical SPDI:: NC_000009.12:111327246:TTT:TT
Gene:: OR2K2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.111327249del, NC_000009.11:g.114089529del, NM_205859.2:c.*236del

Select item 14900473422.

rs1490047342 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:111326666 (GRCh38)
9:114088946 (GRCh37)
Canonical SPDI:: NC_000009.12:111326665:T:C,NC_000009.12:111326665:T:G
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.111326666T>C, NC_000009.12:g.111326666T>G, NC_000009.11:g.114088946T>C, NC_000009.11:g.114088946T>G

Select item 14897647543.

rs1489764754 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 9:111329383 (GRCh38)
9:114091663 (GRCh37)
Canonical SPDI:: NC_000009.12:111329382:AA:A
Gene:: OR2K2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.111329384del, NC_000009.11:g.114091664del

Select item 14891967034.

rs1489196703 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 9:111329776 (GRCh38)
9:114092057 (GRCh37)
Canonical SPDI:: NC_000009.12:111329776:AAA:AAAA
Gene:: OR2K2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAA=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.111329779dup, NC_000009.11:g.114092059dup

Select item 14866890955.

rs1486689095 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:111328053 (GRCh38)
9:114090333 (GRCh37)
Canonical SPDI:: NC_000009.12:111328052:A:G
Gene:: OR2K2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.111328053A>G, NC_000009.11:g.114090333A>G, NM_205859.2:c.381T>C, NM_205859.1:c.381T>C

Select item 14863530466.

rs1486353046 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 9:111332190 (GRCh38)
9:114094470 (GRCh37)
Canonical SPDI:: NC_000009.12:111332189:A:G,NC_000009.12:111332189:A:T
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.111332190A>G, NC_000009.12:g.111332190A>T, NC_000009.11:g.114094470A>G, NC_000009.11:g.114094470A>T

Select item 14857568987.

rs1485756898 [Homo sapiens]

Variant type:: DEL
Alleles:: GTACTATTCCCTT>- [Show Flanks]
Chromosome:: 9:111328462 (GRCh38)
9:114090742 (GRCh37)
Canonical SPDI:: NC_000009.12:111328461:GTACTATTCCCTT:
Gene:: OR2K2 (Varview)
Functional Consequence:: 5_prime_UTR_variant
HGVS:: NC_000009.12:g.111328462_111328474del, NC_000009.11:g.114090742_114090754del, NM_205859.2:c.-41_-29del

Select item 14856602318.

rs1485660231 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:111329435 (GRCh38)
9:114091715 (GRCh37)
Canonical SPDI:: NC_000009.12:111329434:A:G
Gene:: OR2K2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000009.12:g.111329435A>G, NC_000009.11:g.114091715A>G

Select item 14855373949.

rs1485537394 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:111331227 (GRCh38)
9:114093507 (GRCh37)
Canonical SPDI:: NC_000009.12:111331226:A:T
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.111331227A>T, NC_000009.11:g.114093507A>T

Select item 148455772510.

rs1484557725 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:111331708 (GRCh38)
9:114093988 (GRCh37)
Canonical SPDI:: NC_000009.12:111331707:T:A
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.111331708T>A, NC_000009.11:g.114093988T>A

Select item 148445143411.

rs1484451434 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:111330638 (GRCh38)
9:114092918 (GRCh37)
Canonical SPDI:: NC_000009.12:111330637:T:C
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.111330638T>C, NC_000009.11:g.114092918T>C

Select item 148246939212.

rs1482469392 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:111331692 (GRCh38)
9:114093972 (GRCh37)
Canonical SPDI:: NC_000009.12:111331691:A:T
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.111331692A>T, NC_000009.11:g.114093972A>T

Select item 148215636513.

rs1482156365 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:111328100 (GRCh38)
9:114090380 (GRCh37)
Canonical SPDI:: NC_000009.12:111328099:A:G
Gene:: OR2K2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: G=0.000047/1 (ALFA)
G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.111328100A>G, NC_000009.11:g.114090380A>G, NM_205859.2:c.334T>C, NM_205859.1:c.334T>C, NP_995581.1:p.Cys112Arg

Select item 148208296714.

rs1482082967 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:111328595 (GRCh38)
9:114090875 (GRCh37)
Canonical SPDI:: NC_000009.12:111328594:T:C
Gene:: OR2K2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.111328595T>C, NC_000009.11:g.114090875T>C

Select item 148187335415.

rs1481873354 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:111331385 (GRCh38)
9:114093665 (GRCh37)
Canonical SPDI:: NC_000009.12:111331384:C:T
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.111331385C>T, NC_000009.11:g.114093665C>T

Select item 148182144516.

rs1481821445 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:111328472 (GRCh38)
9:114090752 (GRCh37)
Canonical SPDI:: NC_000009.12:111328471:C:G
Gene:: OR2K2 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.111328472C>G, NC_000009.11:g.114090752C>G, NM_205859.2:c.-39G>C

Select item 148066640917.

rs1480666409 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:111331548 (GRCh38)
9:114093828 (GRCh37)
Canonical SPDI:: NC_000009.12:111331547:T:A
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.111331548T>A, NC_000009.11:g.114093828T>A

Select item 148000897618.

rs1480008976 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:111330594 (GRCh38)
9:114092874 (GRCh37)
Canonical SPDI:: NC_000009.12:111330593:C:A,NC_000009.12:111330593:C:T
Gene:: OR2K2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.111330594C>A, NC_000009.12:g.111330594C>T, NC_000009.11:g.114092874C>A, NC_000009.11:g.114092874C>T

Select item 147993861819.

rs1479938618 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:111329196 (GRCh38)
9:114091476 (GRCh37)
Canonical SPDI:: NC_000009.12:111329195:T:C
Gene:: OR2K2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.111329196T>C, NC_000009.11:g.114091476T>C

Select item 147992942220.

rs1479929422 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:111326832 (GRCh38)
9:114089112 (GRCh37)
Canonical SPDI:: NC_000009.12:111326831:A:G
Gene:: OR2K2 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.111326832A>G, NC_000009.11:g.114089112A>G

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