SNP Links for Gene (Select 26245) - SNP

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Select item 14914340701.

rs1491434070 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 1:248239016 (GRCh38)
1:248402318 (GRCh37)
Canonical SPDI:: NC_000001.11:248239012:TCTCT:TCT
Gene:: OR2M4 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency
MAF:: -=0.000004/1 (GnomAD_exomes)
-=0.000008/1 (ExAC)
HGVS:: NC_000001.11:g.248239014CT[1], NC_000001.10:g.248402316CT[1], NM_017504.2:c.88_89del, NM_017504.1:c.88_89del, NP_059974.1:p.Leu30fs

Select item 14871324982.

rs1487132498 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 1:248240206 (GRCh38)
1:248403508 (GRCh37)
Canonical SPDI:: NC_000001.11:248240205:T:A,NC_000001.11:248240205:T:G
Gene:: OR2M4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
G=0.00004/1 (TOMMO)
HGVS:: NC_000001.11:g.248240206T>A, NC_000001.11:g.248240206T>G, NC_000001.10:g.248403508T>A, NC_000001.10:g.248403508T>G, NM_017504.2:c.*342T>A, NM_017504.2:c.*342T>G

Select item 14854085083.

rs1485408508 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248239891 (GRCh38)
1:248403193 (GRCh37)
Canonical SPDI:: NC_000001.11:248239890:A:G
Gene:: OR2M4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.248239891A>G, NC_000001.10:g.248403193A>G, NM_017504.2:c.*27A>G

Select item 14848563744.

rs1484856374 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 1:248238065 (GRCh38)
1:248401367 (GRCh37)
Canonical SPDI:: NC_000001.11:248238064:T:
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000026/7 (TOPMED)
HGVS:: NC_000001.11:g.248238065del, NC_000001.10:g.248401367del

Select item 14813459475.

rs1481345947 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:248239508 (GRCh38)
1:248402810 (GRCh37)
Canonical SPDI:: NC_000001.11:248239507:G:A,NC_000001.11:248239507:G:T
Gene:: OR2M4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.248239508G>A, NC_000001.11:g.248239508G>T, NC_000001.10:g.248402810G>A, NC_000001.10:g.248402810G>T, NM_017504.2:c.580G>A, NM_017504.2:c.580G>T, NM_017504.1:c.580G>A, NM_017504.1:c.580G>T, NP_059974.1:p.Ala194Thr, NP_059974.1:p.Ala194Ser

Select item 14807185576.

rs1480718557 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:248239429 (GRCh38)
1:248402731 (GRCh37)
Canonical SPDI:: NC_000001.11:248239428:T:G
Gene:: OR2M4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.248239429T>G, NC_000001.10:g.248402731T>G, NM_017504.2:c.501T>G, NM_017504.1:c.501T>G

Select item 14803667857.

rs1480366785 [Homo sapiens]

Variant type:: DELINS
Alleles:: AACT>- [Show Flanks]
Chromosome:: 1:248237052 (GRCh38)
1:248400354 (GRCh37)
Canonical SPDI:: NC_000001.11:248237049:CTAACT:CT
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CT=0.000071/1 (ALFA)
-=0.000034/9 (TOPMED)
-=0.00005/7 (GnomAD)
HGVS:: NC_000001.11:g.248237052_248237055del, NC_000001.10:g.248400354_248400357del

Select item 14801203018.

rs1480120301 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:248239450 (GRCh38)
1:248402752 (GRCh37)
Canonical SPDI:: NC_000001.11:248239449:T:G
Gene:: OR2M4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000045/2 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.248239450T>G, NC_000001.10:g.248402752T>G, NM_017504.2:c.522T>G, NM_017504.1:c.522T>G, NP_059974.1:p.Ile174Met

Select item 14797816439.

rs1479781643 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248237787 (GRCh38)
1:248401089 (GRCh37)
Canonical SPDI:: NC_000001.11:248237786:A:G
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.248237787A>G, NC_000001.10:g.248401089A>G

Select item 147918300510.

rs1479183005 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248237737 (GRCh38)
1:248401039 (GRCh37)
Canonical SPDI:: NC_000001.11:248237736:T:C
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.248237737T>C, NC_000001.10:g.248401039T>C

Select item 147883549211.

rs1478835492 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAA>- [Show Flanks]
Chromosome:: 1:248237978 (GRCh38)
1:248401280 (GRCh37)
Canonical SPDI:: NC_000001.11:248237972:AAGAAGAA:AAGAA
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGAA=0.000071/1 (ALFA)
-=0.000029/4 (GnomAD)
-=0.00006/16 (TOPMED)
-=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.248237975GAA[1], NC_000001.10:g.248401277GAA[1]

Select item 147804039912.

rs1478040399 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 1:248237671 (GRCh38)
1:248400973 (GRCh37)
Canonical SPDI:: NC_000001.11:248237670:C:A,NC_000001.11:248237670:C:G
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.248237671C>A, NC_000001.11:g.248237671C>G, NC_000001.10:g.248400973C>A, NC_000001.10:g.248400973C>G

Select item 147774748113.

rs1477747481 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:248239922 (GRCh38)
1:248403224 (GRCh37)
Canonical SPDI:: NC_000001.11:248239921:A:T
Gene:: OR2M4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.248239922A>T, NC_000001.10:g.248403224A>T, NM_017504.2:c.*58A>T

Select item 147765558514.

rs1477655585 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:248238957 (GRCh38)
1:248402259 (GRCh37)
Canonical SPDI:: NC_000001.11:248238956:C:A
Gene:: OR2M4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.248238957C>A, NC_000001.10:g.248402259C>A, NM_017504.2:c.29C>A, NM_017504.1:c.29C>A, NP_059974.1:p.Ser10Tyr

Select item 147695104315.

rs1476951043 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248239839 (GRCh38)
1:248403141 (GRCh37)
Canonical SPDI:: NC_000001.11:248239838:T:C
Gene:: OR2M4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000001.11:g.248239839T>C, NC_000001.10:g.248403141T>C, NM_017504.2:c.911T>C, NM_017504.1:c.911T>C, NP_059974.1:p.Val304Ala

Select item 147537637516.

rs1475376375 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248238760 (GRCh38)
1:248402062 (GRCh37)
Canonical SPDI:: NC_000001.11:248238759:T:C
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.248238760T>C, NC_000001.10:g.248402062T>C

Select item 147518032417.

rs1475180324 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:248239824 (GRCh38)
1:248403126 (GRCh37)
Canonical SPDI:: NC_000001.11:248239823:G:A,NC_000001.11:248239823:G:C
Gene:: OR2M4 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.248239824G>A, NC_000001.11:g.248239824G>C, NC_000001.10:g.248403126G>A, NC_000001.10:g.248403126G>C, NM_017504.2:c.896G>A, NM_017504.2:c.896G>C, NM_017504.1:c.896G>A, NM_017504.1:c.896G>C, NP_059974.1:p.Arg299Lys, NP_059974.1:p.Arg299Thr

Select item 147446577318.

rs1474465773 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:248238506 (GRCh38)
1:248401808 (GRCh37)
Canonical SPDI:: NC_000001.11:248238505:A:T
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.248238506A>T, NC_000001.10:g.248401808A>T

Select item 147071441319.

rs1470714413 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248238195 (GRCh38)
1:248401497 (GRCh37)
Canonical SPDI:: NC_000001.11:248238194:A:G
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.248238195A>G, NC_000001.10:g.248401497A>G

Select item 146953729120.

rs1469537291 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:248237507 (GRCh38)
1:248400809 (GRCh37)
Canonical SPDI:: NC_000001.11:248237506:G:C
Gene:: OR2M4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.248237507G>C, NC_000001.10:g.248400809G>C

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