Links from Gene
Items: 1 to 20 of 3561
1.
rs1490856031 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TATATATATATATATAAAAATATATA>-
[Show Flanks]
- Chromosome:
- 17:7571894
(GRCh38)
17:7475212
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7571886:ATATATATATATATATATATATAAAAATATATA:ATATATA
- Gene:
- EIF4A1 (Varview), SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATATATA=0.00008/1
(
ALFA)
-=0.0001/1
(GnomAD)
-=0.00043/6
(TOMMO)
- HGVS:
2.
rs1490419620 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 17:7563744
(GRCh38)
17:7467061
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7563743:A:C
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,coding_sequence_variant,missense_variant
- Validated:
- by frequency
- MAF:
C=0.000004/1
(GnomAD_exomes)
- HGVS:
3.
rs1490365322 has merged into rs58537439 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TATATATATATATATATATATATATATATATATATATATATATATATATATATATATA>-,TA,TATA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
[Show Flanks]
- Chromosome:
- 17:7571852
(GRCh38)
17:7475170
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000017.11:7571837:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
- Gene:
- EIF4A1 (Varview), SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant,intron_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TATATATATATATA=0./0
(
ALFA)
- HGVS:
NC_000017.11:g.7571838TA[7], NC_000017.11:g.7571838TA[8], NC_000017.11:g.7571838TA[9], NC_000017.11:g.7571838TA[10], NC_000017.11:g.7571838TA[11], NC_000017.11:g.7571838TA[12], NC_000017.11:g.7571838TA[13], NC_000017.11:g.7571838TA[14], NC_000017.11:g.7571838TA[15], NC_000017.11:g.7571838TA[16], NC_000017.11:g.7571838TA[17], NC_000017.11:g.7571838TA[18], NC_000017.11:g.7571838TA[19], NC_000017.11:g.7571838TA[20], NC_000017.11:g.7571838TA[21], NC_000017.11:g.7571838TA[22], NC_000017.11:g.7571838TA[23], NC_000017.11:g.7571838TA[24], NC_000017.11:g.7571838TA[25], NC_000017.11:g.7571838TA[26], NC_000017.11:g.7571838TA[27], NC_000017.11:g.7571838TA[28], NC_000017.11:g.7571838TA[29], NC_000017.11:g.7571838TA[30], NC_000017.11:g.7571838TA[31], NC_000017.11:g.7571838TA[32], NC_000017.11:g.7571838TA[33], NC_000017.11:g.7571838TA[34], NC_000017.11:g.7571838TA[35], NC_000017.11:g.7571838TA[37], NC_000017.11:g.7571838TA[38], NC_000017.11:g.7571838TA[39], NC_000017.11:g.7571838TA[40], NC_000017.10:g.7475156TA[7], NC_000017.10:g.7475156TA[8], NC_000017.10:g.7475156TA[9], NC_000017.10:g.7475156TA[10], NC_000017.10:g.7475156TA[11], NC_000017.10:g.7475156TA[12], NC_000017.10:g.7475156TA[13], NC_000017.10:g.7475156TA[14], NC_000017.10:g.7475156TA[15], NC_000017.10:g.7475156TA[16], NC_000017.10:g.7475156TA[17], NC_000017.10:g.7475156TA[18], NC_000017.10:g.7475156TA[19], NC_000017.10:g.7475156TA[20], NC_000017.10:g.7475156TA[21], NC_000017.10:g.7475156TA[22], NC_000017.10:g.7475156TA[23], NC_000017.10:g.7475156TA[24], NC_000017.10:g.7475156TA[25], NC_000017.10:g.7475156TA[26], NC_000017.10:g.7475156TA[27], NC_000017.10:g.7475156TA[28], NC_000017.10:g.7475156TA[29], NC_000017.10:g.7475156TA[30], NC_000017.10:g.7475156TA[31], NC_000017.10:g.7475156TA[32], NC_000017.10:g.7475156TA[33], NC_000017.10:g.7475156TA[34], NC_000017.10:g.7475156TA[35], NC_000017.10:g.7475156TA[37], NC_000017.10:g.7475156TA[38], NC_000017.10:g.7475156TA[39], NC_000017.10:g.7475156TA[40], NM_015670.6:c.*355TA[7], NM_015670.6:c.*355TA[8], NM_015670.6:c.*355TA[9], NM_015670.6:c.*355TA[10], NM_015670.6:c.*355TA[11], NM_015670.6:c.*355TA[12], NM_015670.6:c.*355TA[13], NM_015670.6:c.*355TA[14], NM_015670.6:c.*355TA[15], NM_015670.6:c.*355TA[16], NM_015670.6:c.*355TA[17], NM_015670.6:c.*355TA[18], NM_015670.6:c.*355TA[19], NM_015670.6:c.*355TA[20], NM_015670.6:c.*355TA[21], NM_015670.6:c.*355TA[22], NM_015670.6:c.*355TA[23], NM_015670.6:c.*355TA[24], NM_015670.6:c.*355TA[25], NM_015670.6:c.*355TA[26], NM_015670.6:c.*355TA[27], NM_015670.6:c.*355TA[28], NM_015670.6:c.*355TA[29], NM_015670.6:c.*355TA[30], NM_015670.6:c.*355TA[31], NM_015670.6:c.*355TA[32], NM_015670.6:c.*355TA[33], NM_015670.6:c.*355TA[34], NM_015670.6:c.*355TA[35], NM_015670.6:c.*355TA[37], NM_015670.6:c.*355TA[38], NM_015670.6:c.*355TA[39], NM_015670.6:c.*355TA[40], NM_015670.5:c.*355TA[7], NM_015670.5:c.*355TA[8], NM_015670.5:c.*355TA[9], NM_015670.5:c.*355TA[10], NM_015670.5:c.*355TA[11], NM_015670.5:c.*355TA[12], NM_015670.5:c.*355TA[13], NM_015670.5:c.*355TA[14], NM_015670.5:c.*355TA[15], NM_015670.5:c.*355TA[16], NM_015670.5:c.*355TA[17], NM_015670.5:c.*355TA[18], NM_015670.5:c.*355TA[19], NM_015670.5:c.*355TA[20], NM_015670.5:c.*355TA[21], NM_015670.5:c.*355TA[22], NM_015670.5:c.*355TA[23], NM_015670.5:c.*355TA[24], NM_015670.5:c.*355TA[25], NM_015670.5:c.*355TA[26], NM_015670.5:c.*355TA[27], NM_015670.5:c.*355TA[28], NM_015670.5:c.*355TA[29], NM_015670.5:c.*355TA[30], NM_015670.5:c.*355TA[31], NM_015670.5:c.*355TA[32], NM_015670.5:c.*355TA[33], NM_015670.5:c.*355TA[34], NM_015670.5:c.*355TA[35], NM_015670.5:c.*355TA[37], NM_015670.5:c.*355TA[38], NM_015670.5:c.*355TA[39], NM_015670.5:c.*355TA[40]
4.
rs1490113033 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTAG>-
[Show Flanks]
- Chromosome:
- 17:7565352
(GRCh38)
17:7468669
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7565349:AGTTAG:AG
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
AG=0.000071/1
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS:
5.
rs1490084958 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C,G
[Show Flanks]
- Chromosome:
- 17:7564877
(GRCh38)
17:7468194
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7564876:T:C,NC_000017.11:7564876:T:G
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
C=0.000004/1
(GnomAD_exomes)
C=0.000007/1
(GnomAD)
- HGVS:
6.
rs1489990902 has merged into rs571416770 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAA>-,A,AA,AAA,AAAAAA
[Show Flanks]
- Chromosome:
- 17:7571910
(GRCh38)
17:7475228
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7571908:AAAAA:A,NC_000017.11:7571908:AAAAA:AA,NC_000017.11:7571908:AAAAA:AAA,NC_000017.11:7571908:AAAAA:AAAA,NC_000017.11:7571908:AAAAA:AAAAAAA
- Gene:
- EIF4A1 (Varview), SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,intron_variant,3_prime_UTR_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
-=0.00207/2
(Korea1K)
-=0.00685/2
(NorthernSweden)
- HGVS:
NC_000017.11:g.7571910_7571913del, NC_000017.11:g.7571911_7571913del, NC_000017.11:g.7571912_7571913del, NC_000017.11:g.7571913del, NC_000017.11:g.7571912_7571913dup, NC_000017.10:g.7475228_7475231del, NC_000017.10:g.7475229_7475231del, NC_000017.10:g.7475230_7475231del, NC_000017.10:g.7475231del, NC_000017.10:g.7475230_7475231dup, NM_015670.6:c.*427_*430del, NM_015670.6:c.*428_*430del, NM_015670.6:c.*429_*430del, NM_015670.6:c.*430del, NM_015670.6:c.*429_*430dup, NM_015670.5:c.*427_*430del, NM_015670.5:c.*428_*430del, NM_015670.5:c.*429_*430del, NM_015670.5:c.*430del, NM_015670.5:c.*429_*430dup
7.
rs1489840975 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:7566112
(GRCh38)
17:7469429
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7566111:C:T
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000214/3
(
ALFA)
T=0.000049/13
(TOPMED)
T=0.000057/8
(GnomAD)
T=0.000546/1
(Korea1K)
- HGVS:
8.
rs1489675291 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- A>-
[Show Flanks]
- Chromosome:
- 17:7560579
(GRCh38)
17:7463896
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7560578:AAA:AA
- Gene:
- TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AA=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
-=0.000007/1
(GnomAD)
- HGVS:
9.
rs1489671258 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:7570421
(GRCh38)
17:7473739
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7570420:C:T
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- synonymous_variant,non_coding_transcript_variant,coding_sequence_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(GnomAD_exomes)
T=0.000007/1
(GnomAD)
T=0.000015/4
(TOPMED)
- HGVS:
10.
rs1489664080 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 17:7561685
(GRCh38)
17:7465002
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7561684:G:C
- Gene:
- TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
12.
rs1489508443 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AT>-
[Show Flanks]
- Chromosome:
- 17:7571309
(GRCh38)
17:7474627
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7571306:ATAT:AT
- Gene:
- EIF4A1 (Varview), SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATAT=0./0
(
ALFA)
-=0.000011/3
(TOPMED)
-=0.000014/2
(GnomAD)
- HGVS:
13.
rs1489488660 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:7563778
(GRCh38)
17:7467095
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7563777:G:A
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- synonymous_variant,non_coding_transcript_variant,coding_sequence_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000011/3
(TOPMED)
- HGVS:
14.
rs1489439492 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 17:7564732
(GRCh38)
17:7468049
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7564731:A:C
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,coding_sequence_variant,missense_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
15.
rs1489079339 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 17:7563100
(GRCh38)
17:7466417
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7563099:C:G,NC_000017.11:7563099:C:T
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- synonymous_variant,non_coding_transcript_variant,coding_sequence_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000012/2
(GnomAD_exomes)
T=0.000035/1
(TOMMO)
- HGVS:
NC_000017.11:g.7563100C>G, NC_000017.11:g.7563100C>T, NC_000017.10:g.7466417C>G, NC_000017.10:g.7466417C>T, NG_029949.1:g.9809C>G, NG_029949.1:g.9809C>T, NM_015670.6:c.24C>G, NM_015670.6:c.24C>T, NM_015670.5:c.24C>G, NM_015670.5:c.24C>T, NR_037926.1:n.307C>G, NR_037926.1:n.307C>T
16.
rs1488970765 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:7570996
(GRCh38)
17:7474314
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7570995:G:A
- Gene:
- EIF4A1 (Varview), SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000021/3
(GnomAD)
- HGVS:
17.
rs1488751286 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C,G
[Show Flanks]
- Chromosome:
- 17:7560089
(GRCh38)
17:7463406
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7560088:T:C,NC_000017.11:7560088:T:G
- Gene:
- TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- coding_sequence_variant,2KB_upstream_variant,non_coding_transcript_variant,synonymous_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
G=0.000004/1
(GnomAD_exomes)
- HGVS:
NC_000017.11:g.7560089T>C, NC_000017.11:g.7560089T>G, NC_000017.10:g.7463406T>C, NC_000017.10:g.7463406T>G, NG_029949.1:g.6798T>C, NG_029949.1:g.6798T>G, NM_003808.4:c.426T>C, NM_003808.4:c.426T>G, NM_003808.3:c.426T>C, NM_003808.3:c.426T>G, NM_172088.4:c.426T>C, NM_172088.4:c.426T>G, NM_172088.3:c.426T>C, NM_172088.3:c.426T>G, NM_172088.2:c.426T>C, NM_172088.2:c.426T>G, NM_172087.3:c.378T>C, NM_172087.3:c.378T>G, NM_172087.2:c.378T>C, NM_172087.2:c.378T>G, NR_073490.3:n.589T>C, NR_073490.3:n.589T>G, NR_073490.2:n.1047T>C, NR_073490.2:n.1047T>G, NM_001198622.2:c.345T>C, NM_001198622.2:c.345T>G, NM_001198622.1:c.345T>C, NM_001198622.1:c.345T>G, NM_001198623.2:c.342T>C, NM_001198623.2:c.342T>G, NM_001198623.1:c.342T>C, NM_001198623.1:c.342T>G, NM_001198624.2:c.291T>C, NM_001198624.2:c.291T>G, NM_001198624.1:c.291T>C, NM_001198624.1:c.291T>G, NM_172089.4:c.666T>C, NM_172089.4:c.666T>G, NM_172089.3:c.666T>C, NM_172089.3:c.666T>G
18.
rs1488741272 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:7560165
(GRCh38)
17:7463482
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7560164:C:T
- Gene:
- TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- coding_sequence_variant,stop_gained,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000008/2
(TOPMED)
- HGVS:
NC_000017.11:g.7560165C>T, NC_000017.10:g.7463482C>T, NG_029949.1:g.6874C>T, NM_003808.4:c.502C>T, NM_003808.3:c.502C>T, NM_172088.4:c.502C>T, NM_172088.3:c.502C>T, NM_172088.2:c.502C>T, NM_172087.3:c.454C>T, NM_172087.2:c.454C>T, NR_073490.3:n.665C>T, NR_073490.2:n.1123C>T, NM_001198622.2:c.421C>T, NM_001198622.1:c.421C>T, NM_001198623.2:c.418C>T, NM_001198623.1:c.418C>T, NM_001198624.2:c.367C>T, NM_001198624.1:c.367C>T, NM_172089.4:c.742C>T, NM_172089.3:c.742C>T, NP_003799.1:p.Gln168Ter, NP_742085.1:p.Gln168Ter, NP_742084.1:p.Gln152Ter, NP_001185551.1:p.Gln141Ter, NP_001185552.1:p.Gln140Ter, NP_001185553.1:p.Gln123Ter, NP_742086.1:p.Gln248Ter
19.
rs1488629501 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:7569076
(GRCh38)
17:7472394
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7569075:G:A
- Gene:
- SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
- HGVS:
20.
rs1488571020 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- G>-
[Show Flanks]
- Chromosome:
- 17:7570991
(GRCh38)
17:7474309
(GRCh37)
- Canonical SPDI:
- NC_000017.11:7570990:GGG:GG
- Gene:
- EIF4A1 (Varview), SENP3 (Varview), SENP3-EIF4A1 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
GG=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS: