SNP Links for Gene (Select 26152) - SNP

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Select item 14912353871.

rs1491235387 [Homo sapiens]

Variant type:: DEL
Alleles:: TC>- [Show Flanks]
Chromosome:: 20:25696087 (GRCh38)
20:25676723 (GRCh37)
Canonical SPDI:: NC_000020.11:25696086:TC:
Gene:: ZNF337 (Varview), LOC107985400 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00034/4 (ALFA)
-=0.00023/13 (GnomAD)
-=0.00152/24 (TOMMO)
HGVS:: NC_000020.11:g.25696087_25696088del, NC_000020.10:g.25676723_25676724del, NG_034058.1:g.5817_5818del, XM_006723558.5:c.-4638_-4637del, XM_006723558.4:c.-4638_-4637del

Select item 14911957222.

rs1491195722 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,AC,GC,GCC,TC,TCC [Show Flanks]
Chromosome:: 20:25696087 (GRCh38)
20:25676724 (GRCh37)
Canonical SPDI:: NC_000020.11:25696087::A,NC_000020.11:25696087::AC,NC_000020.11:25696087::GC,NC_000020.11:25696087::GCC,NC_000020.11:25696087::TC,NC_000020.11:25696087::TCC
Gene:: ZNF337 (Varview), LOC107985400 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TC=0./0 (ALFA)
HGVS:: NC_000020.11:g.25696087_25696088insA, NC_000020.11:g.25696087_25696088insAC, NC_000020.11:g.25696087_25696088insGC, NC_000020.11:g.25696087_25696088insGCC, NC_000020.11:g.25696087_25696088insTC, NC_000020.11:g.25696087_25696088insTCC, NC_000020.10:g.25676723_25676724insA, NC_000020.10:g.25676723_25676724insAC, NC_000020.10:g.25676723_25676724insGC, NC_000020.10:g.25676723_25676724insGCC, NC_000020.10:g.25676723_25676724insTC, NC_000020.10:g.25676723_25676724insTCC, NG_034058.1:g.5817_5818insT, NG_034058.1:g.5817_5818insGT, NG_034058.1:g.5817_5818insGC, NG_034058.1:g.5817_5818insGGC, NG_034058.1:g.5817_5818insGA, NG_034058.1:g.5817_5818insGGA, XM_006723558.5:c.-4638_-4637insT, XM_006723558.5:c.-4638_-4637insGT, XM_006723558.5:c.-4638_-4637insGC, XM_006723558.5:c.-4638_-4637insGGC, XM_006723558.5:c.-4638_-4637insGA, XM_006723558.5:c.-4638_-4637insGGA, XM_006723558.4:c.-4638_-4637insT, XM_006723558.4:c.-4638_-4637insGT, XM_006723558.4:c.-4638_-4637insGC, XM_006723558.4:c.-4638_-4637insGGC, XM_006723558.4:c.-4638_-4637insGA, XM_006723558.4:c.-4638_-4637insGGA

Select item 14911083593.

rs1491108359 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 20:25696100 (GRCh38)
20:25676737 (GRCh37)
Canonical SPDI:: NC_000020.11:25696100::A
Gene:: ZNF337 (Varview), LOC107985400 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000009/1 (GnomAD)
HGVS:: NC_000020.11:g.25696100_25696101insA, NC_000020.10:g.25676736_25676737insA, NG_034058.1:g.5804_5805insT, XM_006723558.5:c.-4651_-4650insT, XM_006723558.4:c.-4651_-4650insT

Select item 14910641384.

rs1491064138 has merged into rs35337654 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,A,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA [Show Flanks]
Chromosome:: 20:25689147 (GRCh38)
20:25669783 (GRCh37)
Canonical SPDI:: NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:25689134:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: ZNF337 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.25/2 (KOREAN)
HGVS:: NC_000020.11:g.25689147_25689154del, NC_000020.11:g.25689148_25689154del, NC_000020.11:g.25689150_25689154del, NC_000020.11:g.25689151_25689154del, NC_000020.11:g.25689152_25689154del, NC_000020.11:g.25689153_25689154del, NC_000020.11:g.25689154del, NC_000020.11:g.25689154dup, NC_000020.11:g.25689153_25689154dup, NC_000020.11:g.25689152_25689154dup, NC_000020.11:g.25689151_25689154dup, NC_000020.11:g.25689150_25689154dup, NC_000020.10:g.25669783_25669790del, NC_000020.10:g.25669784_25669790del, NC_000020.10:g.25669786_25669790del, NC_000020.10:g.25669787_25669790del, NC_000020.10:g.25669788_25669790del, NC_000020.10:g.25669789_25669790del, NC_000020.10:g.25669790del, NC_000020.10:g.25669790dup, NC_000020.10:g.25669789_25669790dup, NC_000020.10:g.25669788_25669790dup, NC_000020.10:g.25669787_25669790dup, NC_000020.10:g.25669786_25669790dup, NG_034058.1:g.12763_12770del, NG_034058.1:g.12764_12770del, NG_034058.1:g.12766_12770del, NG_034058.1:g.12767_12770del, NG_034058.1:g.12768_12770del, NG_034058.1:g.12769_12770del, NG_034058.1:g.12770del, NG_034058.1:g.12770dup, NG_034058.1:g.12769_12770dup, NG_034058.1:g.12768_12770dup, NG_034058.1:g.12767_12770dup, NG_034058.1:g.12766_12770dup

Select item 14909505515.

rs1490950551 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 20:25683468 (GRCh38)
20:25664104 (GRCh37)
Canonical SPDI:: NC_000020.11:25683467:G:C
Gene:: ZNF337 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000020.11:g.25683468G>C, NC_000020.10:g.25664104G>C, NG_034058.1:g.18437C>G

Select item 14902419986.

rs1490241998 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 20:25692737 (GRCh38)
20:25673373 (GRCh37)
Canonical SPDI:: NC_000020.11:25692736:TG:
Gene:: ZNF337 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.25692737_25692738del, NC_000020.10:g.25673373_25673374del, NG_034058.1:g.9167_9168del, XM_006723558.5:c.-1288_-1287del, XM_006723558.4:c.-1288_-1287del

Select item 14901957267.

rs1490195726 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:25691583 (GRCh38)
20:25672219 (GRCh37)
Canonical SPDI:: NC_000020.11:25691582:G:A
Gene:: ZNF337 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.25691583G>A, NC_000020.10:g.25672219G>A, NG_034058.1:g.10322C>T, XM_006723558.5:c.-133C>T, XM_006723558.4:c.-133C>T, XM_006723558.3:c.-133C>T, XM_006723558.2:c.-133C>T, XM_017027803.3:c.-133C>T, XM_017027803.2:c.-133C>T, XM_017027803.1:c.-133C>T

Select item 14901839598.

rs1490183959 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 20:25684671 (GRCh38)
20:25665308 (GRCh37)
Canonical SPDI:: NC_000020.11:25684671:AGAG:AGAGAG
Gene:: ZNF337 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAG=0./0 (ALFA)
AG=0.000008/2 (TOPMED)
AG=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.25684672AG[3], NC_000020.10:g.25665308AG[3], NG_034058.1:g.17230CT[3]

Select item 14901690049.

rs1490169004 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:25681483 (GRCh38)
20:25662119 (GRCh37)
Canonical SPDI:: NC_000020.11:25681482:A:G
Gene:: ZNF337 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.25681483A>G, NC_000020.10:g.25662119A>G, NG_034058.1:g.20422T>C

Select item 149006378410.

rs1490063784 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:25674020 (GRCh38)
20:25654656 (GRCh37)
Canonical SPDI:: NC_000020.11:25674019:C:T
Gene:: ZNF337 (Varview), ZNF337-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.25674020C>T, NC_000020.10:g.25654656C>T, NG_034058.1:g.27885G>A, NM_015655.4:c.*1012G>A, NM_015655.3:c.*1012G>A, NM_001290261.2:c.*1012G>A, NM_001290261.1:c.*1012G>A, XM_006723558.5:c.*1012G>A, XM_005260702.4:c.*1012G>A, XM_011529219.3:c.*1012G>A, XM_017027803.3:c.*1012G>A

Select item 149001994311.

rs1490019943 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:25686902 (GRCh38)
20:25667538 (GRCh37)
Canonical SPDI:: NC_000020.11:25686901:T:C
Gene:: ZNF337 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000034/9 (TOPMED)
C=0.00005/7 (GnomAD)
HGVS:: NC_000020.11:g.25686902T>C, NC_000020.10:g.25667538T>C, NG_034058.1:g.15003A>G, NM_001290261.2:c.-485A>G, NM_001290261.1:c.-485A>G

Select item 148997073112.

rs1489970731 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:25684273 (GRCh38)
20:25664909 (GRCh37)
Canonical SPDI:: NC_000020.11:25684272:C:T
Gene:: ZNF337 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000020.11:g.25684273C>T, NC_000020.10:g.25664909C>T, NG_034058.1:g.17632G>A

Select item 148942895813.

rs1489428958 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:25694002 (GRCh38)
20:25674638 (GRCh37)
Canonical SPDI:: NC_000020.11:25694001:C:A
Gene:: ZNF337 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.25694002C>A, NC_000020.10:g.25674638C>A, NG_034058.1:g.7903G>T, XM_006723558.5:c.-2552G>T, XM_006723558.4:c.-2552G>T

Select item 148942481014.

rs1489424810 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:25675106 (GRCh38)
20:25655742 (GRCh37)
Canonical SPDI:: NC_000020.11:25675105:A:G
Gene:: ZNF337 (Varview), ZNF337-AS1 (Varview)
Functional Consequence:: missense_variant,downstream_transcript_variant,genic_downstream_transcript_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.25675106A>G, NC_000020.10:g.25655742A>G, NG_034058.1:g.26799T>C, NM_015655.4:c.2182T>C, NM_015655.3:c.2182T>C, NM_015655.2:c.2182T>C, NM_001290261.2:c.2182T>C, NM_001290261.1:c.2182T>C, XM_006723558.5:c.2182T>C, XM_006723558.4:c.2182T>C, XM_006723558.3:c.2182T>C, XM_006723558.2:c.2182T>C, XM_006723558.1:c.2182T>C, XM_005260702.4:c.2086T>C, XM_005260702.3:c.2086T>C, XM_005260702.2:c.2086T>C, XM_005260702.1:c.2086T>C, XM_011529219.3:c.2182T>C, XM_011529219.2:c.2182T>C, XM_011529219.1:c.2182T>C, XM_017027803.3:c.2086T>C, XM_017027803.2:c.2086T>C, XM_017027803.1:c.2086T>C, NP_056470.1:p.Tyr728His, NP_001277190.1:p.Tyr728His, XP_006723621.1:p.Tyr728His, XP_005260759.1:p.Tyr696His, XP_011527521.1:p.Tyr728His, XP_016883292.1:p.Tyr696His

Select item 148935638215.

rs1489356382 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 20:25684301 (GRCh38)
20:25664937 (GRCh37)
Canonical SPDI:: NC_000020.11:25684300:T:A
Gene:: ZNF337 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.00046/8 (TOMMO)
A=0.000546/1 (Korea1K)
A=0.001369/4 (KOREAN)
HGVS:: NC_000020.11:g.25684301T>A, NC_000020.10:g.25664937T>A, NG_034058.1:g.17604A>T

Select item 148902322016.

rs1489023220 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:25675494 (GRCh38)
20:25656130 (GRCh37)
Canonical SPDI:: NC_000020.11:25675493:C:T
Gene:: ZNF337 (Varview), ZNF337-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,coding_sequence_variant,synonymous_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.00007/2 (TOMMO)
HGVS:: NC_000020.11:g.25675494C>T, NC_000020.10:g.25656130C>T, NG_034058.1:g.26411G>A, NM_015655.4:c.1794G>A, NM_015655.3:c.1794G>A, NM_015655.2:c.1794G>A, NM_001290261.2:c.1794G>A, NM_001290261.1:c.1794G>A, XM_006723558.5:c.1794G>A, XM_006723558.4:c.1794G>A, XM_006723558.3:c.1794G>A, XM_006723558.2:c.1794G>A, XM_006723558.1:c.1794G>A, XM_005260702.4:c.1698G>A, XM_005260702.3:c.1698G>A, XM_005260702.2:c.1698G>A, XM_005260702.1:c.1698G>A, XM_011529219.3:c.1794G>A, XM_011529219.2:c.1794G>A, XM_011529219.1:c.1794G>A, XM_017027803.3:c.1698G>A, XM_017027803.2:c.1698G>A, XM_017027803.1:c.1698G>A

Select item 148887604417.

rs1488876044 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:25696909 (GRCh38)
20:25677545 (GRCh37)
Canonical SPDI:: NC_000020.11:25696908:A:G
Gene:: ZNF337 (Varview), LOC107985400 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000020.11:g.25696909A>G, NC_000020.10:g.25677545A>G, NG_034058.1:g.4996T>C

Select item 148884508718.

rs1488845087 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:25681785 (GRCh38)
20:25662421 (GRCh37)
Canonical SPDI:: NC_000020.11:25681784:A:G
Gene:: ZNF337 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.25681785A>G, NC_000020.10:g.25662421A>G, NG_034058.1:g.20120T>C

Select item 148865775719.

rs1488657757 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 20:25698080 (GRCh38)
20:25678716 (GRCh37)
Canonical SPDI:: NC_000020.11:25698079:T:A
Gene:: ZNF337 (Varview), LOC107985400 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000020.11:g.25698080T>A, NC_000020.10:g.25678716T>A, NG_034058.1:g.3825A>T

Select item 148852796020.

rs1488527960 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACAGAA>- [Show Flanks]
Chromosome:: 20:25689991 (GRCh38)
20:25670627 (GRCh37)
Canonical SPDI:: NC_000020.11:25689988:AAACAGAA:AA
Gene:: ZNF337 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0.000142/2 (ALFA)
-=0.00003/8 (TOPMED)
HGVS:: NC_000020.11:g.25689991_25689996del, NC_000020.10:g.25670627_25670632del, NG_034058.1:g.11911_11916del

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