SNP Links for Gene (Select 26149) - SNP

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Select item 14913626131.

rs1491362613 has merged into rs200943142 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 9:66915406 (GRCh38)
9:40777438 (GRCh37)
Canonical SPDI:: NC_000009.12:66915397:AAAAAAAAAAAAAA:AAAAAAAA,NC_000009.12:66915397:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000009.12:66915397:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000009.12:66915397:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000009.12:66915397:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000009.12:66915397:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000009.12:66915397:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000009.12:g.66915406_66915411del, NC_000009.12:g.66915409_66915411del, NC_000009.12:g.66915410_66915411del, NC_000009.12:g.66915411del, NC_000009.12:g.66915411dup, NC_000009.12:g.66915410_66915411dup, NC_000009.12:g.66915400_66915411dup, NC_000009.11:g.40777438_40777443del, NC_000009.11:g.40777441_40777443del, NC_000009.11:g.40777442_40777443del, NC_000009.11:g.40777443del, NC_000009.11:g.40777443dup, NC_000009.11:g.40777442_40777443dup, NC_000009.11:g.40777432_40777443dup

Select item 14912478122.

rs1491247812 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 9:66910803 (GRCh38)
9:40782037 (GRCh37)
Canonical SPDI:: NC_000009.12:66910802:TA:
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.0007/3 (ALFA)
HGVS:: NC_000009.12:g.66910803_66910804del, NC_000009.11:g.40782037_40782038del

Select item 14911381563.

rs1491138156 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 9:66915410 (GRCh38)
9:40777431 (GRCh37)
Canonical SPDI:: NC_000009.12:66915410::G
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00025/3 (ALFA)
G=0.00025/7 (TOMMO)
G=0.00055/1 (Korea1K)
HGVS:: NC_000009.12:g.66915410_66915411insG, NC_000009.11:g.40777430_40777431insC

Select item 14911128494.

rs1491112849 has merged into rs546463734 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA [Show Flanks]
Chromosome:: 9:66910817 (GRCh38)
9:40782035 (GRCh37)
Canonical SPDI:: NC_000009.12:66910803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000009.12:66910803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000009.12:66910803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000009.12:66910803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000009.12:66910803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAAAA=0./0 (ALFA)
T=0.475/19 (GENOME_DK)
HGVS:: NC_000009.12:g.66910817_66910819del, NC_000009.12:g.66910818_66910819del, NC_000009.12:g.66910819del, NC_000009.12:g.66910819dup, NC_000009.12:g.66910818_66910819dup, NC_000009.11:g.40782035_40782037del, NC_000009.11:g.40782036_40782037del, NC_000009.11:g.40782037del, NC_000009.11:g.40782037dup, NC_000009.11:g.40782036_40782037dup

Select item 14909854145.

rs1490985414 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:66915407 (GRCh38)
9:40777434 (GRCh37)
Canonical SPDI:: NC_000009.12:66915406:A:T
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.66915407A>T, NC_000009.11:g.40777434T>A

Select item 14909829376.

rs1490982937 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:66927106 (GRCh38)
9:40765735 (GRCh37)
Canonical SPDI:: NC_000009.12:66927105:G:A,NC_000009.12:66927105:G:C
Gene:: ZNF658 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000009.12:g.66927106G>A, NC_000009.12:g.66927106G>C, NC_000009.11:g.40765735C>T, NC_000009.11:g.40765735C>G

Select item 14907011387.

rs1490701138 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 9:66928032 (GRCh38)
9:40764809 (GRCh37)
Canonical SPDI:: NC_000009.12:66928031:T:A,NC_000009.12:66928031:T:G
Gene:: ZNF658 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.66928032T>A, NC_000009.12:g.66928032T>G, NC_000009.11:g.40764809A>T, NC_000009.11:g.40764809A>C

Select item 14906438818.

rs1490643881 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:66908618 (GRCh38)
9:40784223 (GRCh37)
Canonical SPDI:: NC_000009.12:66908617:T:C
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.66908618T>C, NC_000009.11:g.40784223A>G

Select item 14904998629.

rs1490499862 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:66932449 (GRCh38)
9:40760392 (GRCh37)
Canonical SPDI:: NC_000009.12:66932448:T:C
Gene:: ZNF658 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.66932449T>C, NC_000009.11:g.40760392A>G

Select item 149041334810.

rs1490413348 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:66919417 (GRCh38)
9:40773424 (GRCh37)
Canonical SPDI:: NC_000009.12:66919416:C:T
Gene:: ZNF658 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.002458/33 (ALFA)
A=0.00105/59 (GnomAD_exomes)
T=0.002631/323 (GnomAD)
T=0.002655/17 (1000Genomes)
HGVS:: NC_000009.12:g.66919417C>T, NC_000009.11:g.40773424G>A, NM_033160.7:c.1851C>T, NM_033160.6:c.1851C>T, NM_033160.5:c.1851C>T, XM_005272515.6:c.1851C>T, XM_005272515.5:c.1851C>T, XM_005272515.4:c.1851C>T, XM_005272515.3:c.1851C>T, XM_005272515.2:c.1851C>T, XM_005272515.1:c.1851C>T, XM_011545679.4:c.1851C>T, XM_011545679.3:c.1851C>T, XM_011545679.2:c.1851C>T, XM_011545679.1:c.1851C>T, NM_001317916.2:c.1851C>T, NM_001317916.1:c.1851C>T, XM_047423212.1:c.1851C>T

Select item 149038341211.

rs1490383412 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 9:66909323 (GRCh38)
9:40783518 (GRCh37)
Canonical SPDI:: NC_000009.12:66909321:ACA:A
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.66909323_66909324del, NC_000009.11:g.40783518_40783519del

Select item 149037038212.

rs1490370382 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:66917767 (GRCh38)
9:40775074 (GRCh37)
Canonical SPDI:: NC_000009.12:66917766:T:A
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000009/1 (GnomAD)
HGVS:: NC_000009.12:g.66917767T>A, NC_000009.11:g.40775074A>T

Select item 149036756413.

rs1490367564 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:66920141 (GRCh38)
9:40772700 (GRCh37)
Canonical SPDI:: NC_000009.12:66920140:T:A
Gene:: ZNF658 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.66920141T>A, NC_000009.11:g.40772700A>T, NM_033160.7:c.2575T>A, NM_033160.6:c.2575T>A, NM_033160.5:c.2575T>A, XM_005272515.6:c.2575T>A, XM_005272515.5:c.2575T>A, XM_005272515.4:c.2575T>A, XM_005272515.3:c.2575T>A, XM_005272515.2:c.2575T>A, XM_005272515.1:c.2575T>A, XM_011545679.4:c.2575T>A, XM_011545679.3:c.2575T>A, XM_011545679.2:c.2575T>A, XM_011545679.1:c.2575T>A, NM_001317916.2:c.2575T>A, NM_001317916.1:c.2575T>A, XM_047423212.1:c.2575T>A, NP_149350.3:p.Cys859Ser, XP_005272572.1:p.Cys859Ser, XP_011543981.1:p.Cys859Ser, NP_001304845.1:p.Cys859Ser, XP_047279168.1:p.Cys859Ser

Select item 149036615214.

rs1490366152 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:66920858 (GRCh38)
9:40771983 (GRCh37)
Canonical SPDI:: NC_000009.12:66920857:A:G
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.66920858A>G, NC_000009.11:g.40771983T>C, NM_033160.7:c.*112A>G, NM_033160.6:c.*112A>G, NM_033160.5:c.*112A>G, XM_005272515.6:c.*112A>G, XM_005272515.5:c.*112A>G, XM_005272515.4:c.*112A>G, XM_005272515.3:c.*112A>G, XM_005272515.2:c.*112A>G, XM_005272515.1:c.*112A>G, XM_011545679.4:c.*112A>G, XM_011545679.3:c.*112A>G, XM_011545679.2:c.*112A>G, XM_011545679.1:c.*112A>G, NM_001317916.2:c.*112A>G, NM_001317916.1:c.*112A>G, XM_047423212.1:c.*112A>G

Select item 149034284315.

rs1490342843 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:66899592 (GRCh38)
9:40793249 (GRCh37)
Canonical SPDI:: NC_000009.12:66899591:A:C
Gene:: ZNF658 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.66899592A>C, NC_000009.11:g.40793249T>G

Select item 149032973016.

rs1490329730 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:66898811 (GRCh38)
9:40794030 (GRCh37)
Canonical SPDI:: NC_000009.12:66898810:A:C
Gene:: ZNF658 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.66898811A>C, NC_000009.11:g.40794030T>G

Select item 149021098117.

rs1490210981 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:66928429 (GRCh38)
9:40764412 (GRCh37)
Canonical SPDI:: NC_000009.12:66928428:T:A
Gene:: ZNF658 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.66928429T>A, NC_000009.11:g.40764412A>T

Select item 149014679118.

rs1490146791 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTT>- [Show Flanks]
Chromosome:: 9:66929027 (GRCh38)
9:40763815 (GRCh37)
Canonical SPDI:: NC_000009.12:66929022:CTTTCTTT:CTTT
Gene:: ZNF658 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTTCTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.66929023CTTT[1], NC_000009.11:g.40763811AAAG[1]

Select item 149009937019.

rs1490099370 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:66922286 (GRCh38)
9:40770555 (GRCh37)
Canonical SPDI:: NC_000009.12:66922285:C:A,NC_000009.12:66922285:C:T
Gene:: ZNF658 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000743/12 (TOMMO)
HGVS:: NC_000009.12:g.66922286C>A, NC_000009.12:g.66922286C>T, NC_000009.11:g.40770555G>T, NC_000009.11:g.40770555G>A

Select item 149005088920.

rs1490050889 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 9:66909967 (GRCh38)
9:40782874 (GRCh37)
Canonical SPDI:: NC_000009.12:66909966:C:A,NC_000009.12:66909966:C:G,NC_000009.12:66909966:C:T
Gene:: ZNF658 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.66909967C>A, NC_000009.12:g.66909967C>G, NC_000009.12:g.66909967C>T, NC_000009.11:g.40782874G>T, NC_000009.11:g.40782874G>C, NC_000009.11:g.40782874G>A