SNP Links for Gene (Select 26082) - SNP

Links from Gene

Items: 1 to 20 of 3440

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Select item 14911072651.

rs1491107265 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 15:30211729 (GRCh38)
15:30503932 (GRCh37)
Canonical SPDI:: NC_000015.10:30211728:AG:
Gene:: LINC02249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.30211729_30211730del, NC_000015.9:g.30503932_30503933del, NW_011332701.1:g.2384164_2384165del, NT_187660.1:g.2496648_2496649del, NR_026771.1:n.1449_1450del

Select item 14909455612.

rs1490945561 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:30197865 (GRCh38)
15:30490068 (GRCh37)
Canonical SPDI:: NC_000015.10:30197864:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00006/5 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000015.10:g.30197865C>T, NC_000015.9:g.30490068C>T, NW_011332701.1:g.2370301C>T, NT_187660.1:g.2482785C>T

Select item 14907259393.

rs1490725939 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:30206621 (GRCh38)
15:30498824 (GRCh37)
Canonical SPDI:: NC_000015.10:30206620:T:C
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.30206621T>C, NC_000015.9:g.30498824T>C, NW_011332701.1:g.2379057T>C, NT_187660.1:g.2491541T>C

Select item 14904565414.

rs1490456541 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:30199449 (GRCh38)
15:30491652 (GRCh37)
Canonical SPDI:: NC_000015.10:30199448:T:G
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.0161/191 (ALFA)
G=0.017/1550 (GnomAD)
G=0.02748/176 (1000Genomes)
T=0.5/4 (SGDP_PRJ)
HGVS:: NC_000015.10:g.30199449T>G, NC_000015.9:g.30491652T>G, NW_011332701.1:g.2371885T>G, NT_187660.1:g.2484369T>G

Select item 14904160215.

rs1490416021 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:30195177 (GRCh38)
15:30487380 (GRCh37)
Canonical SPDI:: NC_000015.10:30195176:C:A,NC_000015.10:30195176:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000015.10:g.30195177C>A, NC_000015.10:g.30195177C>T, NC_000015.9:g.30487380C>A, NC_000015.9:g.30487380C>T, NW_011332701.1:g.2367639C>A, NW_011332701.1:g.2367639C>T, NT_187660.1:g.2480123C>A, NT_187660.1:g.2480123C>T

Select item 14903591776.

rs1490359177 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:30196096 (GRCh38)
15:30488299 (GRCh37)
Canonical SPDI:: NC_000015.10:30196095:C:A,NC_000015.10:30196095:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.30196096C>A, NC_000015.10:g.30196096C>T, NC_000015.9:g.30488299C>A, NC_000015.9:g.30488299C>T, NW_011332701.1:g.2368532C>A, NW_011332701.1:g.2368532C>T, NT_187660.1:g.2481016C>A, NT_187660.1:g.2481016C>T, NR_026771.1:n.61C>A, NR_026771.1:n.61C>T

Select item 14902426097.

rs1490242609 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:30202671 (GRCh38)
15:30494874 (GRCh37)
Canonical SPDI:: NC_000015.10:30202670:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000016/2 (GnomAD)
HGVS:: NC_000015.10:g.30202671C>T, NC_000015.9:g.30494874C>T, NW_011332701.1:g.2375107C>T, NT_187660.1:g.2487591C>T

Select item 14899630848.

rs1489963084 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:30201190 (GRCh38)
15:30493393 (GRCh37)
Canonical SPDI:: NC_000015.10:30201189:C:A,NC_000015.10:30201189:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.30201190C>A, NC_000015.10:g.30201190C>T, NC_000015.9:g.30493393C>A, NC_000015.9:g.30493393C>T, NW_011332701.1:g.2373626C>A, NW_011332701.1:g.2373626C>T, NT_187660.1:g.2486110C>A, NT_187660.1:g.2486110C>T

Select item 14899496229.

rs1489949622 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:30214867 (GRCh38)
15:30507070 (GRCh37)
Canonical SPDI:: NC_000015.10:30214866:G:C
Gene:: LINC02249 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000017/2 (GnomAD)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.30214867G>C, NC_000015.9:g.30507070G>C, NW_011332701.1:g.2387303G>C, NT_187660.1:g.2499787G>C

Select item 148992628410.

rs1489926284 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:30194868 (GRCh38)
15:30487071 (GRCh37)
Canonical SPDI:: NC_000015.10:30194867:T:C
Gene:: LINC02249 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00011/2 (TOMMO)
C=0.0021/6 (KOREAN)
HGVS:: NC_000015.10:g.30194868T>C, NC_000015.9:g.30487071T>C, NW_011332701.1:g.2367332T>C, NT_187660.1:g.2479816T>C

Select item 148989086011.

rs1489890860 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:30195755 (GRCh38)
15:30487958 (GRCh37)
Canonical SPDI:: NC_000015.10:30195754:C:A
Gene:: LINC02249 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.30195755C>A, NC_000015.9:g.30487958C>A, NW_011332701.1:g.2368191C>A, NT_187660.1:g.2480675C>A

Select item 148970046712.

rs1489700467 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:30204670 (GRCh38)
15:30496873 (GRCh37)
Canonical SPDI:: NC_000015.10:30204669:T:C
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.30204670T>C, NC_000015.9:g.30496873T>C, NW_011332701.1:g.2377106T>C, NT_187660.1:g.2489590T>C

Select item 148969120713.

rs1489691207 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:30205333 (GRCh38)
15:30497536 (GRCh37)
Canonical SPDI:: NC_000015.10:30205332:T:A
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.30205333T>A, NC_000015.9:g.30497536T>A, NW_011332701.1:g.2377769T>A, NT_187660.1:g.2490253T>A

Select item 148963774914.

rs1489637749 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:30198253 (GRCh38)
15:30490456 (GRCh37)
Canonical SPDI:: NC_000015.10:30198252:T:A
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000008/1 (GnomAD)
HGVS:: NC_000015.10:g.30198253T>A, NC_000015.9:g.30490456T>A, NW_011332701.1:g.2370689T>A, NT_187660.1:g.2483173T>A

Select item 148947688015.

rs1489476880 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:30203677 (GRCh38)
15:30495880 (GRCh37)
Canonical SPDI:: NC_000015.10:30203676:A:G
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00047/1 (GnomAD)
HGVS:: NC_000015.10:g.30203677A>G, NC_000015.9:g.30495880A>G, NW_011332701.1:g.2376113A>G, NT_187660.1:g.2488597A>G

Select item 148947468616.

rs1489474686 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:30203816 (GRCh38)
15:30496019 (GRCh37)
Canonical SPDI:: NC_000015.10:30203815:G:C
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.30203816G>C, NC_000015.9:g.30496019G>C, NW_011332701.1:g.2376252G>C, NT_187660.1:g.2488736G>C

Select item 148946779717.

rs1489467797 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:30213453 (GRCh38)
15:30505656 (GRCh37)
Canonical SPDI:: NC_000015.10:30213452:A:G
Gene:: LINC02249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.30213453A>G, NC_000015.9:g.30505656A>G, NW_011332701.1:g.2385889A>G, NT_187660.1:g.2498373A>G, NR_026771.1:n.3173A>G

Select item 148939093918.

rs1489390939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:30209330 (GRCh38)
15:30501533 (GRCh37)
Canonical SPDI:: NC_000015.10:30209329:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/1 (GnomAD)
HGVS:: NC_000015.10:g.30209330C>T, NC_000015.9:g.30501533C>T, NW_011332701.1:g.2381766C>T, NT_187660.1:g.2494250C>T

Select item 148926104419.

rs1489261044 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:30214457 (GRCh38)
15:30506660 (GRCh37)
Canonical SPDI:: NC_000015.10:30214456:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000037/5 (GnomAD)
HGVS:: NC_000015.10:g.30214457C>T, NC_000015.9:g.30506660C>T, NW_011332701.1:g.2386893C>T, NT_187660.1:g.2499377C>T, NR_026771.1:n.4177C>T

Select item 148922768920.

rs1489227689 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:30213114 (GRCh38)
15:30505317 (GRCh37)
Canonical SPDI:: NC_000015.10:30213113:C:T
Gene:: LINC02249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000022/3 (GnomAD)
HGVS:: NC_000015.10:g.30213114C>T, NC_000015.9:g.30505317C>T, NW_011332701.1:g.2385550C>T, NT_187660.1:g.2498034C>T, NR_026771.1:n.2834C>T

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