SNP Links for Gene (Select 25804) - SNP

Links from Gene

Items: 1 to 20 of 1000

<< First< Prev

Page of 50

Next >Last >>

Select item 14915718341.

rs1491571834 has merged into rs72247833 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT [Show Flanks]
Chromosome:: 19:18324890 (GRCh38)
19:18435700 (GRCh37)
Canonical SPDI:: NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:18324881:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT
Gene:: LSM4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000019.10:g.18324890_18324893del, NC_000019.10:g.18324891_18324893del, NC_000019.10:g.18324892_18324893del, NC_000019.10:g.18324893del, NC_000019.10:g.18324893dup, NC_000019.10:g.18324892_18324893dup, NC_000019.10:g.18324891_18324893dup, NC_000019.10:g.18324890_18324893dup, NC_000019.10:g.18324889_18324893dup, NC_000019.10:g.18324888_18324893dup, NC_000019.10:g.18324887_18324893dup, NC_000019.9:g.18435700_18435703del, NC_000019.9:g.18435701_18435703del, NC_000019.9:g.18435702_18435703del, NC_000019.9:g.18435703del, NC_000019.9:g.18435703dup, NC_000019.9:g.18435702_18435703dup, NC_000019.9:g.18435701_18435703dup, NC_000019.9:g.18435700_18435703dup, NC_000019.9:g.18435699_18435703dup, NC_000019.9:g.18435698_18435703dup, NC_000019.9:g.18435697_18435703dup

Select item 14909773252.

rs1490977325 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 19:18324027 (GRCh38)
19:18434837 (GRCh37)
Canonical SPDI:: NC_000019.10:18324021:TGTGTGT:TGTGT
Gene:: LSM4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.18324023GT[2], NC_000019.9:g.18434833GT[2]

Select item 14906735713.

rs1490673571 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:18317385 (GRCh38)
19:18428195 (GRCh37)
Canonical SPDI:: NC_000019.10:18317384:T:C
Gene:: LSM4 (Varview), LOC105372300 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000019.10:g.18317385T>C, NC_000019.9:g.18428195T>C, XR_007067156.1:n.1641T>C

Select item 14903054504.

rs1490305450 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:18317443 (GRCh38)
19:18428253 (GRCh37)
Canonical SPDI:: NC_000019.10:18317442:C:G
Gene:: LSM4 (Varview), LOC105372300 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.18317443C>G, NC_000019.9:g.18428253C>G, XR_007067156.1:n.1699C>G

Select item 14902723555.

rs1490272355 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:18313989 (GRCh38)
19:18424799 (GRCh37)
Canonical SPDI:: NC_000019.10:18313988:T:G
Gene:: LSM4 (Varview), LOC105372300 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.18313989T>G, NC_000019.9:g.18424799T>G

Select item 14900263666.

rs1490026366 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:18310279 (GRCh38)
19:18421089 (GRCh37)
Canonical SPDI:: NC_000019.10:18310278:T:C
Gene:: LSM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.18310279T>C, NC_000019.9:g.18421089T>C

Select item 14896853127.

rs1489685312 has merged into rs56871762 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATATATAT>-,AT,ATAT,ATATAT,ATATATATAT,ATATATATATAT,ATATATATATATAT,ATATATATATATATAT [Show Flanks]
Chromosome:: 19:18324875 (GRCh38)
19:18435685 (GRCh37)
Canonical SPDI:: NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATAT,NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATATAT,NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATATATAT,NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATATATATAT,NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATATATATATATAT,NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATATATATATATATAT,NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATATATATATATATATAT,NC_000019.10:18324861:TATATATATATATATATATAT:TATATATATATATATATATATATATATAT
Gene:: LSM4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATAT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.18324863AT[6], NC_000019.10:g.18324863AT[7], NC_000019.10:g.18324863AT[8], NC_000019.10:g.18324863AT[9], NC_000019.10:g.18324863AT[11], NC_000019.10:g.18324863AT[12], NC_000019.10:g.18324863AT[13], NC_000019.10:g.18324863AT[14], NC_000019.9:g.18435673AT[6], NC_000019.9:g.18435673AT[7], NC_000019.9:g.18435673AT[8], NC_000019.9:g.18435673AT[9], NC_000019.9:g.18435673AT[11], NC_000019.9:g.18435673AT[12], NC_000019.9:g.18435673AT[13], NC_000019.9:g.18435673AT[14]

Select item 14891802568.

rs1489180256 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:18317772 (GRCh38)
19:18428582 (GRCh37)
Canonical SPDI:: NC_000019.10:18317771:C:A
Gene:: LSM4 (Varview), LOC105372300 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.18317772C>A, NC_000019.9:g.18428582C>A

Select item 14891185089.

rs1489118508 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:18308682 (GRCh38)
19:18419492 (GRCh37)
Canonical SPDI:: NC_000019.10:18308681:C:T
Gene:: LSM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.18308682C>T, NC_000019.9:g.18419492C>T

Select item 148873133810.

rs1488731338 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:18315221 (GRCh38)
19:18426031 (GRCh37)
Canonical SPDI:: NC_000019.10:18315220:G:A
Gene:: LSM4 (Varview), LOC105372300 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.18315221G>A, NC_000019.9:g.18426031G>A

Select item 148851910111.

rs1488519101 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:18314422 (GRCh38)
19:18425232 (GRCh37)
Canonical SPDI:: NC_000019.10:18314421:G:T
Gene:: LSM4 (Varview), LOC105372300 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.18314422G>T, NC_000019.9:g.18425232G>T

Select item 148834292712.

rs1488342927 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:18311882 (GRCh38)
19:18422692 (GRCh37)
Canonical SPDI:: NC_000019.10:18311881:G:A
Gene:: LSM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.18311882G>A, NC_000019.9:g.18422692G>A

Select item 148803631913.

rs1488036319 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:18323539 (GRCh38)
19:18434349 (GRCh37)
Canonical SPDI:: NC_000019.10:18323538:G:A
Gene:: LSM4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.18323539G>A, NC_000019.9:g.18434349G>A

Select item 148782628914.

rs1487826289 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:18312350 (GRCh38)
19:18423160 (GRCh37)
Canonical SPDI:: NC_000019.10:18312349:A:C
Gene:: LSM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.18312350A>C, NC_000019.9:g.18423160A>C

Select item 148745867015.

rs1487458670 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:18320175 (GRCh38)
19:18430985 (GRCh37)
Canonical SPDI:: NC_000019.10:18320174:A:T
Gene:: LSM4 (Varview), LOC105372300 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.18320175A>T, NC_000019.9:g.18430985A>T, XR_936365.1:n.659A>T

Select item 148730345816.

rs1487303458 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:18310309 (GRCh38)
19:18421119 (GRCh37)
Canonical SPDI:: NC_000019.10:18310308:C:T
Gene:: LSM4 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000019.10:g.18310309C>T, NC_000019.9:g.18421119C>T

Select item 148723182017.

rs1487231820 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 19:18307081 (GRCh38)
19:18417891 (GRCh37)
Canonical SPDI:: NC_000019.10:18307080:T:A,NC_000019.10:18307080:T:C
Gene:: LSM4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.18307081T>A, NC_000019.10:g.18307081T>C, NC_000019.9:g.18417891T>A, NC_000019.9:g.18417891T>C, NM_012321.5:c.*383A>T, NM_012321.5:c.*383A>G, NM_012321.4:c.*383A>T, NM_012321.4:c.*383A>G, NM_001252129.2:c.*383A>T, NM_001252129.2:c.*383A>G, NM_001252129.1:c.*383A>T, NM_001252129.1:c.*383A>G

Select item 148722862518.

rs1487228625 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:18308260 (GRCh38)
19:18419070 (GRCh37)
Canonical SPDI:: NC_000019.10:18308259:C:T
Gene:: LSM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000034/9 (TOPMED)
T=0.00005/7 (GnomAD)
HGVS:: NC_000019.10:g.18308260C>T, NC_000019.9:g.18419070C>T

Select item 148696744119.

rs1486967441 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 19:18306745 (GRCh38)
19:18417555 (GRCh37)
Canonical SPDI:: NC_000019.10:18306744:TTTT:TTT
Gene:: LSM4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.18306748del, NC_000019.9:g.18417558del, NM_012321.5:c.*719del, NM_012321.4:c.*719del, NM_001252129.2:c.*719del, NM_001252129.1:c.*719del

Select item 148695271720.

rs1486952717 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:18306669 (GRCh38)
19:18417479 (GRCh37)
Canonical SPDI:: NC_000019.10:18306668:A:C
Gene:: LSM4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.18306669A>C, NC_000019.9:g.18417479A>C, NM_012321.5:c.*795T>G, NM_012321.4:c.*795T>G, NM_001252129.2:c.*795T>G, NM_001252129.1:c.*795T>G

dbSNP

Result Filters

Validation Status

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 1000

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity