SNP Links for Gene (Select 256021) - SNP

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Select item 14915885671.

rs1491588567 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 12:92101433 (GRCh38)
12:92495210 (GRCh37)
Canonical SPDI:: NC_000012.12:92101433:G:GG
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
HGVS:: NC_000012.12:g.92101434dup, NC_000012.11:g.92495210dup

Select item 14915812242.

rs1491581224 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:92074553 (GRCh38)
12:92468329 (GRCh37)
Canonical SPDI:: NC_000012.12:92074552:CA:
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00017/2 (ALFA)
HGVS:: NC_000012.12:g.92074553_92074554del, NC_000012.11:g.92468329_92468330del

Select item 14915656443.

rs1491565644 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:91999507 (GRCh38)
12:92393283 (GRCh37)
Canonical SPDI:: NC_000012.12:91999506:CA:
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000012.12:g.91999507_91999508del, NC_000012.11:g.92393283_92393284del

Select item 14915519734.

rs1491551973 has merged into rs1186265976 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 12:92101463 (GRCh38)
12:92495239 (GRCh37)
Canonical SPDI:: NC_000012.12:92101461:AGA:A,NC_000012.12:92101461:AGA:AGAGA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGA=0./0 (ALFA)
HGVS:: NC_000012.12:g.92101463_92101464del, NC_000012.12:g.92101463_92101464dup, NC_000012.11:g.92495239_92495240del, NC_000012.11:g.92495239_92495240dup

Select item 14915055975.

rs1491505597 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: 12:92101454 (GRCh38)
12:92495230 (GRCh37)
Canonical SPDI:: NC_000012.12:92101453:GG:
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000012.12:g.92101454_92101455del, NC_000012.11:g.92495230_92495231del

Select item 14914971216.

rs1491497121 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 12:92101453 (GRCh38)
12:92495229 (GRCh37)
Canonical SPDI:: NC_000012.12:92101452:AG:
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00014/8 (GnomAD)
HGVS:: NC_000012.12:g.92101453_92101454del, NC_000012.11:g.92495229_92495230del

Select item 14914885577.

rs1491488557 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 12:92111897 (GRCh38)
12:92505674 (GRCh37)
Canonical SPDI:: NC_000012.12:92111897::G
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000084/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.92111897_92111898insG, NC_000012.11:g.92505673_92505674insG

Select item 14914860328.

rs1491486032 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 12:91995661 (GRCh38)
12:92389438 (GRCh37)
Canonical SPDI:: NC_000012.12:91995661:C:CC
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000036/5 (GnomAD)
HGVS:: NC_000012.12:g.91995662dup, NC_000012.11:g.92389438dup

Select item 14914794019.

rs1491479401 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:92111837 (GRCh38)
12:92505613 (GRCh37)
Canonical SPDI:: NC_000012.12:92111836:CA:
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.00046/8 (TOMMO)
-=0.00055/1 (Korea1K)
HGVS:: NC_000012.12:g.92111837_92111838del, NC_000012.11:g.92505613_92505614del

Select item 149147917510.

rs1491479175 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 12:92101507 (GRCh38)
12:92495283 (GRCh37)
Canonical SPDI:: NC_000012.12:92101505:AGA:A
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000012.12:g.92101507_92101508del, NC_000012.11:g.92495283_92495284del

Select item 149146830711.

rs1491468307 has merged into rs1337462201 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 12:92101467 (GRCh38)
12:92495243 (GRCh37)
Canonical SPDI:: NC_000012.12:92101465:AGA:A,NC_000012.12:92101465:AGA:AGAGA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGA=0./0 (ALFA)
AG=0.00006/1 (TOMMO)
AG=0.00638/427 (GnomAD)
HGVS:: NC_000012.12:g.92101467_92101468del, NC_000012.12:g.92101467_92101468dup, NC_000012.11:g.92495243_92495244del, NC_000012.11:g.92495243_92495244dup

Select item 149146615412.

rs1491466154 has merged into rs768959151 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A [Show Flanks]
Chromosome:: 12:92101404 (GRCh38)
12:92495180 (GRCh37)
Canonical SPDI:: NC_000012.12:92101402:AAA:A,NC_000012.12:92101402:AAA:AA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.0003/5 (TOMMO)
HGVS:: NC_000012.12:g.92101404_92101405del, NC_000012.12:g.92101405del, NC_000012.11:g.92495180_92495181del, NC_000012.11:g.92495181del

Select item 149144757813.

rs1491447578 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 12:92101455 (GRCh38)
12:92495231 (GRCh37)
Canonical SPDI:: NC_000012.12:92101454:GA:
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000012.12:g.92101455_92101456del, NC_000012.11:g.92495231_92495232del

Select item 149143171414.

rs1491431714 has merged into rs766028164 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA [Show Flanks]
Chromosome:: 12:92093961 (GRCh38)
12:92487737 (GRCh37)
Canonical SPDI:: NC_000012.12:92093959:AAA:A,NC_000012.12:92093959:AAA:AA,NC_000012.12:92093959:AAA:AAAA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00137/20 (ALFA)
-=0.01439/8 (NorthernSweden)
HGVS:: NC_000012.12:g.92093961_92093962del, NC_000012.12:g.92093962del, NC_000012.12:g.92093962dup, NC_000012.11:g.92487737_92487738del, NC_000012.11:g.92487738del, NC_000012.11:g.92487738dup

Select item 149142530215.

rs1491425302 has merged into rs1351809567 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 12:92101450 (GRCh38)
12:92495226 (GRCh37)
Canonical SPDI:: NC_000012.12:92101448:AGA:A,NC_000012.12:92101448:AGA:AGAGA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
AG=0.00267/43 (TOMMO)
AG=0.00407/294 (GnomAD)
HGVS:: NC_000012.12:g.92101450_92101451del, NC_000012.12:g.92101450_92101451dup, NC_000012.11:g.92495226_92495227del, NC_000012.11:g.92495226_92495227dup

Select item 149141140916.

rs1491411409 has merged into rs35233445 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA [Show Flanks]
Chromosome:: 12:92138093 (GRCh38)
12:92531869 (GRCh37)
Canonical SPDI:: NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000012.12:g.92138081CA[6], NC_000012.12:g.92138081CA[7], NC_000012.12:g.92138081CA[8], NC_000012.12:g.92138081CA[9], NC_000012.12:g.92138081CA[10], NC_000012.12:g.92138081CA[11], NC_000012.12:g.92138081CA[13], NC_000012.12:g.92138081CA[14], NC_000012.12:g.92138081CA[15], NC_000012.12:g.92138081CA[16], NC_000012.11:g.92531857CA[6], NC_000012.11:g.92531857CA[7], NC_000012.11:g.92531857CA[8], NC_000012.11:g.92531857CA[9], NC_000012.11:g.92531857CA[10], NC_000012.11:g.92531857CA[11], NC_000012.11:g.92531857CA[13], NC_000012.11:g.92531857CA[14], NC_000012.11:g.92531857CA[15], NC_000012.11:g.92531857CA[16]

Select item 149141041617.

rs1491410416 has merged into rs781700224 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 12:92101454 (GRCh38)
12:92495230 (GRCh37)
Canonical SPDI:: NC_000012.12:92101453:GG:G,NC_000012.12:92101453:GG:GGG
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0./0 (ALFA)
-=0.18198/6059 (GnomAD)
-=0.28514/4422 (TOMMO)
HGVS:: NC_000012.12:g.92101455del, NC_000012.12:g.92101455dup, NC_000012.11:g.92495231del, NC_000012.11:g.92495231dup

Select item 149139404318.

rs1491394043 has merged into rs768291459 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 12:92101442 (GRCh38)
12:92495218 (GRCh37)
Canonical SPDI:: NC_000012.12:92101440:AGA:A,NC_000012.12:92101440:AGA:AGAGA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGA=0./0 (ALFA)
AG=0.00601/98 (TOMMO)
AG=0.0067/12 (Korea1K)
AG=0.00755/28 (TWINSUK)
AG=0.01168/45 (ALSPAC)
HGVS:: NC_000012.12:g.92101442_92101443del, NC_000012.12:g.92101442_92101443dup, NC_000012.11:g.92495218_92495219del, NC_000012.11:g.92495218_92495219dup

Select item 149138731519.

rs1491387315 has merged into rs1465752397 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAAA,AATAAA [Show Flanks]
Chromosome:: 12:92101400 (GRCh38)
12:92495176 (GRCh37)
Canonical SPDI:: NC_000012.12:92101398:AAA:A,NC_000012.12:92101398:AAA:AA,NC_000012.12:92101398:AAA:AAAAA,NC_000012.12:92101398:AAA:AAATAAA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
HGVS:: NC_000012.12:g.92101400_92101401del, NC_000012.12:g.92101401del, NC_000012.12:g.92101400_92101401dup, NC_000012.12:g.92101401_92101402insTAAA, NC_000012.11:g.92495176_92495177del, NC_000012.11:g.92495177del, NC_000012.11:g.92495176_92495177dup, NC_000012.11:g.92495177_92495178insTAAA

Select item 149137999920.

rs1491379999 has merged into rs35233445 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA [Show Flanks]
Chromosome:: 12:92138093 (GRCh38)
12:92531869 (GRCh37)
Canonical SPDI:: NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000012.12:92138079:ACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000012.12:g.92138081CA[6], NC_000012.12:g.92138081CA[7], NC_000012.12:g.92138081CA[8], NC_000012.12:g.92138081CA[9], NC_000012.12:g.92138081CA[10], NC_000012.12:g.92138081CA[11], NC_000012.12:g.92138081CA[13], NC_000012.12:g.92138081CA[14], NC_000012.12:g.92138081CA[15], NC_000012.12:g.92138081CA[16], NC_000012.11:g.92531857CA[6], NC_000012.11:g.92531857CA[7], NC_000012.11:g.92531857CA[8], NC_000012.11:g.92531857CA[9], NC_000012.11:g.92531857CA[10], NC_000012.11:g.92531857CA[11], NC_000012.11:g.92531857CA[13], NC_000012.11:g.92531857CA[14], NC_000012.11:g.92531857CA[15], NC_000012.11:g.92531857CA[16]

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