Links from Gene
Items: 1 to 20 of 1000
1.
rs1491553135 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CA>-
[Show Flanks]
- Chromosome:
- 6:116521532
(GRCh38)
6:116842695
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116521530:ACA:A
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- intron_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.002082/34
(
ALFA)
-=0.000602/10
(TOMMO)
-=0.0015/209
(GnomAD)
-=0.001667/1
(NorthernSweden)
-=0.00203/13
(1000Genomes)
-=0.008303/32
(ALSPAC)
-=0.00836/31
(TWINSUK)
- HGVS:
2.
rs1491296646 has merged into rs59420398 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TATA>-,TA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATA
[Show Flanks]
- Chromosome:
- 6:116511199
(GRCh38)
6:116832362
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116511183:ATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATA
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATATATATATATATATA=0./0
(
ALFA)
ATAT=0.3922/1964
(1000Genomes)
- HGVS:
NC_000006.12:g.116511185TA[7], NC_000006.12:g.116511185TA[8], NC_000006.12:g.116511185TA[10], NC_000006.12:g.116511185TA[11], NC_000006.12:g.116511185TA[12], NC_000006.12:g.116511185TA[13], NC_000006.12:g.116511185TA[14], NC_000006.12:g.116511185TA[15], NC_000006.12:g.116511185TA[16], NC_000006.12:g.116511185TA[17], NC_000006.12:g.116511185TA[18], NC_000006.12:g.116511185TA[19], NC_000006.12:g.116511185TA[20], NC_000006.12:g.116511185TA[21], NC_000006.12:g.116511185TA[22], NC_000006.11:g.116832348TA[7], NC_000006.11:g.116832348TA[8], NC_000006.11:g.116832348TA[10], NC_000006.11:g.116832348TA[11], NC_000006.11:g.116832348TA[12], NC_000006.11:g.116832348TA[13], NC_000006.11:g.116832348TA[14], NC_000006.11:g.116832348TA[15], NC_000006.11:g.116832348TA[16], NC_000006.11:g.116832348TA[17], NC_000006.11:g.116832348TA[18], NC_000006.11:g.116832348TA[19], NC_000006.11:g.116832348TA[20], NC_000006.11:g.116832348TA[21], NC_000006.11:g.116832348TA[22]
4.
rs1491085727 has merged into rs59896067 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ATAT>-,AT,ATATAT,ATATATAT,ATATATATAT,ATATATATATAT,ATATATATATATAT,ATATATATGTATATATATATGTATATATATATATATATAT
[Show Flanks]
- Chromosome:
- 6:116511118
(GRCh38)
6:116832281
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116511106:TATATATATATATAT:TATATATATAT,NC_000006.12:116511106:TATATATATATATAT:TATATATATATAT,NC_000006.12:116511106:TATATATATATATAT:TATATATATATATATAT,NC_000006.12:116511106:TATATATATATATAT:TATATATATATATATATAT,NC_000006.12:116511106:TATATATATATATAT:TATATATATATATATATATAT,NC_000006.12:116511106:TATATATATATATAT:TATATATATATATATATATATAT,NC_000006.12:116511106:TATATATATATATAT:TATATATATATATATATATATATAT,NC_000006.12:116511106:TATATATATATATAT:TATATATATATATATATATGTATATATATATGTATATATATATATATATAT
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TATATATATATAT=0./0
(
ALFA)
TATA=0.1842/7
(GENOME_DK)
- HGVS:
NC_000006.12:g.116511108AT[5], NC_000006.12:g.116511108AT[6], NC_000006.12:g.116511108AT[8], NC_000006.12:g.116511108AT[9], NC_000006.12:g.116511108AT[10], NC_000006.12:g.116511108AT[11], NC_000006.12:g.116511108AT[12], NC_000006.12:g.116511107_116511121TA[9]TGTATATATATA[2]TA[4]T[1], NC_000006.11:g.116832271AT[5], NC_000006.11:g.116832271AT[6], NC_000006.11:g.116832271AT[8], NC_000006.11:g.116832271AT[9], NC_000006.11:g.116832271AT[10], NC_000006.11:g.116832271AT[11], NC_000006.11:g.116832271AT[12], NC_000006.11:g.116832270_116832284TA[9]TGTATATATATA[2]TA[4]T[1]
5.
rs1490823654 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C,G
[Show Flanks]
- Chromosome:
- 6:116511481
(GRCh38)
6:116832644
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116511480:T:C,NC_000006.12:116511480:T:G
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
C=0.000007/1
(GnomAD)
- HGVS:
6.
rs1490644783 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C,G
[Show Flanks]
- Chromosome:
- 6:116510182
(GRCh38)
6:116831345
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116510181:T:C,NC_000006.12:116510181:T:G
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
C=0.000029/4
(GnomAD)
C=0.000035/1
(TOMMO)
- HGVS:
7.
rs1489881760 has merged into rs57050552 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TATATATATATATATATATATATATATATATATATATATA>-,TA,TATA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATATATATA
[Show Flanks]
- Chromosome:
- 6:116516670
(GRCh38)
6:116837833
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000006.12:116516660:ATATATATATATATATATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000006.12:g.116516662TA[4], NC_000006.12:g.116516662TA[5], NC_000006.12:g.116516662TA[6], NC_000006.12:g.116516662TA[7], NC_000006.12:g.116516662TA[8], NC_000006.12:g.116516662TA[9], NC_000006.12:g.116516662TA[10], NC_000006.12:g.116516662TA[11], NC_000006.12:g.116516662TA[12], NC_000006.12:g.116516662TA[13], NC_000006.12:g.116516662TA[14], NC_000006.12:g.116516662TA[15], NC_000006.12:g.116516662TA[16], NC_000006.12:g.116516662TA[17], NC_000006.12:g.116516662TA[18], NC_000006.12:g.116516662TA[19], NC_000006.12:g.116516662TA[20], NC_000006.12:g.116516662TA[21], NC_000006.12:g.116516662TA[22], NC_000006.12:g.116516662TA[23], NC_000006.12:g.116516662TA[25], NC_000006.12:g.116516662TA[26], NC_000006.12:g.116516662TA[27], NC_000006.12:g.116516662TA[28], NC_000006.12:g.116516662TA[29], NC_000006.12:g.116516662TA[30], NC_000006.12:g.116516662TA[32], NC_000006.11:g.116837825TA[4], NC_000006.11:g.116837825TA[5], NC_000006.11:g.116837825TA[6], NC_000006.11:g.116837825TA[7], NC_000006.11:g.116837825TA[8], NC_000006.11:g.116837825TA[9], NC_000006.11:g.116837825TA[10], NC_000006.11:g.116837825TA[11], NC_000006.11:g.116837825TA[12], NC_000006.11:g.116837825TA[13], NC_000006.11:g.116837825TA[14], NC_000006.11:g.116837825TA[15], NC_000006.11:g.116837825TA[16], NC_000006.11:g.116837825TA[17], NC_000006.11:g.116837825TA[18], NC_000006.11:g.116837825TA[19], NC_000006.11:g.116837825TA[20], NC_000006.11:g.116837825TA[21], NC_000006.11:g.116837825TA[22], NC_000006.11:g.116837825TA[23], NC_000006.11:g.116837825TA[25], NC_000006.11:g.116837825TA[26], NC_000006.11:g.116837825TA[27], NC_000006.11:g.116837825TA[28], NC_000006.11:g.116837825TA[29], NC_000006.11:g.116837825TA[30], NC_000006.11:g.116837825TA[32], NM_153711.5:c.*673TA[4], NM_153711.5:c.*673TA[5], NM_153711.5:c.*673TA[6], NM_153711.5:c.*673TA[7], NM_153711.5:c.*673TA[8], NM_153711.5:c.*673TA[9], NM_153711.5:c.*673TA[10], NM_153711.5:c.*673TA[11], NM_153711.5:c.*673TA[12], NM_153711.5:c.*673TA[13], NM_153711.5:c.*673TA[14], NM_153711.5:c.*673TA[15], NM_153711.5:c.*673TA[16], NM_153711.5:c.*673TA[17], NM_153711.5:c.*673TA[18], NM_153711.5:c.*673TA[19], NM_153711.5:c.*673TA[20], NM_153711.5:c.*673TA[21], NM_153711.5:c.*673TA[22], NM_153711.5:c.*673TA[23], NM_153711.5:c.*673TA[25], NM_153711.5:c.*673TA[26], NM_153711.5:c.*673TA[27], NM_153711.5:c.*673TA[28], NM_153711.5:c.*673TA[29], NM_153711.5:c.*673TA[30], NM_153711.5:c.*673TA[32], NM_153711.4:c.*673TA[4], NM_153711.4:c.*673TA[5], NM_153711.4:c.*673TA[6], NM_153711.4:c.*673TA[7], NM_153711.4:c.*673TA[8], NM_153711.4:c.*673TA[9], NM_153711.4:c.*673TA[10], NM_153711.4:c.*673TA[11], NM_153711.4:c.*673TA[12], NM_153711.4:c.*673TA[13], NM_153711.4:c.*673TA[14], NM_153711.4:c.*673TA[15], NM_153711.4:c.*673TA[16], NM_153711.4:c.*673TA[17], NM_153711.4:c.*673TA[18], NM_153711.4:c.*673TA[19], NM_153711.4:c.*673TA[20], NM_153711.4:c.*673TA[21], NM_153711.4:c.*673TA[22], NM_153711.4:c.*673TA[23], NM_153711.4:c.*673TA[25], NM_153711.4:c.*673TA[26], NM_153711.4:c.*673TA[27], NM_153711.4:c.*673TA[28], NM_153711.4:c.*673TA[29], NM_153711.4:c.*673TA[30], NM_153711.4:c.*673TA[32], NM_153711.3:c.*673TA[4], NM_153711.3:c.*673TA[5], NM_153711.3:c.*673TA[6], NM_153711.3:c.*673TA[7], NM_153711.3:c.*673TA[8], NM_153711.3:c.*673TA[9], NM_153711.3:c.*673TA[10], NM_153711.3:c.*673TA[11], NM_153711.3:c.*673TA[12], NM_153711.3:c.*673TA[13], NM_153711.3:c.*673TA[14], NM_153711.3:c.*673TA[15], NM_153711.3:c.*673TA[16], NM_153711.3:c.*673TA[17], NM_153711.3:c.*673TA[18], NM_153711.3:c.*673TA[19], NM_153711.3:c.*673TA[20], NM_153711.3:c.*673TA[21], NM_153711.3:c.*673TA[22], NM_153711.3:c.*673TA[23], NM_153711.3:c.*673TA[25], NM_153711.3:c.*673TA[26], NM_153711.3:c.*673TA[27], NM_153711.3:c.*673TA[28], NM_153711.3:c.*673TA[29], NM_153711.3:c.*673TA[30], NM_153711.3:c.*673TA[32], NM_153711.2:c.*673TA[4], NM_153711.2:c.*673TA[5], NM_153711.2:c.*673TA[6], NM_153711.2:c.*673TA[7], NM_153711.2:c.*673TA[8], NM_153711.2:c.*673TA[9], NM_153711.2:c.*673TA[10], NM_153711.2:c.*673TA[11], NM_153711.2:c.*673TA[12], NM_153711.2:c.*673TA[13], NM_153711.2:c.*673TA[14], NM_153711.2:c.*673TA[15], NM_153711.2:c.*673TA[16], NM_153711.2:c.*673TA[17], NM_153711.2:c.*673TA[18], NM_153711.2:c.*673TA[19], NM_153711.2:c.*673TA[20], NM_153711.2:c.*673TA[21], NM_153711.2:c.*673TA[22], NM_153711.2:c.*673TA[23], NM_153711.2:c.*673TA[25], NM_153711.2:c.*673TA[26], NM_153711.2:c.*673TA[27], NM_153711.2:c.*673TA[28], NM_153711.2:c.*673TA[29], NM_153711.2:c.*673TA[30], NM_153711.2:c.*673TA[32]
8.
rs1489844164 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 6:116510706
(GRCh38)
6:116831869
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116510705:C:T
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000011/3
(TOPMED)
- HGVS:
9.
rs1489512660 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 6:116517438
(GRCh38)
6:116838601
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116517437:G:A
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000684/2
(KOREAN)
- HGVS:
10.
rs1489482278 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 6:116516638
(GRCh38)
6:116837801
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116516637:T:G
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000008/1
(GnomAD)
- HGVS:
11.
rs1489383776 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 6:116513745
(GRCh38)
6:116834908
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116513744:A:C
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000008/2
(TOPMED)
C=0.000021/3
(GnomAD)
- HGVS:
12.
rs1489228513 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 6:116522243
(GRCh38)
6:116843406
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116522242:A:C
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
13.
rs1489127827 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 6:116521262
(GRCh38)
6:116842425
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116521261:C:G,NC_000006.12:116521261:C:T
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000011/3
(TOPMED)
T=0.000779/13
(TOMMO)
- HGVS:
14.
rs1488833252 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,G
[Show Flanks]
- Chromosome:
- 6:116519529
(GRCh38)
6:116840692
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116519528:C:A,NC_000006.12:116519528:C:G
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
A=0.000014/2
(GnomAD)
A=0.000023/6
(TOPMED)
- HGVS:
15.
rs1488746031 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->A
[Show Flanks]
- Chromosome:
- 6:116522669
(GRCh38)
6:116843833
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116522669:AAA:AAAA
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAA=0.000224/1
(
ALFA)
A=0.000014/2
(GnomAD)
A=0.000223/1
(Estonian)
- HGVS:
16.
rs1488418002 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C,G
[Show Flanks]
- Chromosome:
- 6:116524469
(GRCh38)
6:116845632
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116524468:T:C,NC_000006.12:116524468:T:G
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
17.
rs1488333765 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->A
[Show Flanks]
- Chromosome:
- 6:116521694
(GRCh38)
6:116842858
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116521694:AA:AAA
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAA=0.000071/1
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000087/23
(TOPMED)
- HGVS:
18.
rs1488325790 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 6:116521702
(GRCh38)
6:116842865
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116521701:T:C
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000224/1
(
ALFA)
C=0.000007/1
(GnomAD)
C=0.000223/1
(Estonian)
- HGVS:
19.
rs1488324576 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 6:116511701
(GRCh38)
6:116832864
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116511700:A:G
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- coding_sequence_variant,missense_variant,intron_variant
- Validated:
- by frequency
- MAF:
G=0.000004/1
(GnomAD_exomes)
- HGVS:
20.
rs1487831217 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 6:116519814
(GRCh38)
6:116840977
(GRCh37)
- Canonical SPDI:
- NC_000006.12:116519813:G:C
- Gene:
- CALHM5 (Varview), TRAPPC3L (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000071/1
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS: