SNP Links for Gene (Select 2282) - SNP

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Select item 14911736471.

rs1491173647 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 19:57825279 (GRCh38)
19:58336647 (GRCh37)
Canonical SPDI:: NC_000019.10:57825278:CT:
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57825279_57825280del, NC_000019.9:g.58336647_58336648del

Select item 14904211332.

rs1490421133 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:57829175 (GRCh38)
19:58340543 (GRCh37)
Canonical SPDI:: NC_000019.10:57829174:G:A
Gene:: FKBP1AP1 (Varview), ZNF587B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57829175G>A, NC_000019.9:g.58340543G>A

Select item 14897564033.

rs1489756403 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:57827827 (GRCh38)
19:58339195 (GRCh37)
Canonical SPDI:: NC_000019.10:57827826:A:G
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.57827827A>G, NC_000019.9:g.58339195A>G

Select item 14887522074.

rs1488752207 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 19:57826556 (GRCh38)
19:58337924 (GRCh37)
Canonical SPDI:: NC_000019.10:57826555:A:
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.57826556del, NC_000019.9:g.58337924del, NR_024162.1:n.386del

Select item 14886246695.

rs1488624669 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:57825308 (GRCh38)
19:58336676 (GRCh37)
Canonical SPDI:: NC_000019.10:57825307:G:C
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000084/1 (ALFA)
C=0.000016/2 (GnomAD)
HGVS:: NC_000019.10:g.57825308G>C, NC_000019.9:g.58336676G>C, NR_024162.1:n.1634C>G

Select item 14877961856.

rs1487796185 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:57828761 (GRCh38)
19:58340129 (GRCh37)
Canonical SPDI:: NC_000019.10:57828760:T:C
Gene:: FKBP1AP1 (Varview), ZNF587B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.57828761T>C, NC_000019.9:g.58340129T>C

Select item 14874219967.

rs1487421996 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:57826418 (GRCh38)
19:58337786 (GRCh37)
Canonical SPDI:: NC_000019.10:57826417:G:A
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57826418G>A, NC_000019.9:g.58337786G>A, NR_024162.1:n.524C>T

Select item 14869845798.

rs1486984579 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:57825826 (GRCh38)
19:58337194 (GRCh37)
Canonical SPDI:: NC_000019.10:57825825:T:C
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000084/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57825826T>C, NC_000019.9:g.58337194T>C, NR_024162.1:n.1116A>G

Select item 14856304179.

rs1485630417 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 19:57826357 (GRCh38)
19:58337725 (GRCh37)
Canonical SPDI:: NC_000019.10:57826356:CC:C
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0.000671/3 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.57826358del, NC_000019.9:g.58337726del, NR_024162.1:n.585del

Select item 148450047310.

rs1484500473 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:57825453 (GRCh38)
19:58336821 (GRCh37)
Canonical SPDI:: NC_000019.10:57825452:T:G
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57825453T>G, NC_000019.9:g.58336821T>G, NR_024162.1:n.1489A>C

Select item 148419663311.

rs1484196633 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:57828487 (GRCh38)
19:58339855 (GRCh37)
Canonical SPDI:: NC_000019.10:57828486:G:A,NC_000019.10:57828486:G:T
Gene:: FKBP1AP1 (Varview), ZNF587B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.57828487G>A, NC_000019.10:g.57828487G>T, NC_000019.9:g.58339855G>A, NC_000019.9:g.58339855G>T

Select item 148364319212.

rs1483643192 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 19:57827972 (GRCh38)
19:58339340 (GRCh37)
Canonical SPDI:: NC_000019.10:57827971:C:
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.57827972del, NC_000019.9:g.58339340del

Select item 148337509713.

rs1483375097 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:57828620 (GRCh38)
19:58339988 (GRCh37)
Canonical SPDI:: NC_000019.10:57828619:G:T
Gene:: FKBP1AP1 (Varview), ZNF587B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000119/2 (TOMMO)
T=0.000156/1 (1000Genomes)
T=0.000546/1 (Korea1K)
T=0.001369/4 (KOREAN)
HGVS:: NC_000019.10:g.57828620G>T, NC_000019.9:g.58339988G>T

Select item 148238862014.

rs1482388620 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:57826196 (GRCh38)
19:58337564 (GRCh37)
Canonical SPDI:: NC_000019.10:57826195:T:C
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.57826196T>C, NC_000019.9:g.58337564T>C, NR_024162.1:n.746A>G

Select item 148200996915.

rs1482009969 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:57827490 (GRCh38)
19:58338858 (GRCh37)
Canonical SPDI:: NC_000019.10:57827489:T:C
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57827490T>C, NC_000019.9:g.58338858T>C

Select item 148198104116.

rs1481981041 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 19:57829445 (GRCh38)
19:58340814 (GRCh37)
Canonical SPDI:: NC_000019.10:57829445:G:GG
Gene:: FKBP1AP1 (Varview), ZNF587B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.57829446dup, NC_000019.9:g.58340814dup

Select item 148170784817.

rs1481707848 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:57828974 (GRCh38)
19:58340342 (GRCh37)
Canonical SPDI:: NC_000019.10:57828973:G:A,NC_000019.10:57828973:G:T
Gene:: FKBP1AP1 (Varview), ZNF587B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57828974G>A, NC_000019.10:g.57828974G>T, NC_000019.9:g.58340342G>A, NC_000019.9:g.58340342G>T

Select item 148050702918.

rs1480507029 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAAG>- [Show Flanks]
Chromosome:: 19:57829008 (GRCh38)
19:58340376 (GRCh37)
Canonical SPDI:: NC_000019.10:57829004:AAGGAAG:AAG
Gene:: FKBP1AP1 (Varview), ZNF587B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAG=0.000498/7 (ALFA)
-=0.00025/35 (GnomAD)
-=0.000276/73 (TOPMED)
HGVS:: NC_000019.10:g.57829008_57829011del, NC_000019.9:g.58340376_58340379del

Select item 148038718119.

rs1480387181 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:57827540 (GRCh38)
19:58338908 (GRCh37)
Canonical SPDI:: NC_000019.10:57827539:A:G
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.57827540A>G, NC_000019.9:g.58338908A>G

Select item 147878710020.

rs1478787100 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:57828041 (GRCh38)
19:58339409 (GRCh37)
Canonical SPDI:: NC_000019.10:57828040:A:G
Gene:: FKBP1AP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57828041A>G, NC_000019.9:g.58339409A>G

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