SNP Links for Gene (Select 2217) - SNP

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Select item 14915490121.

rs1491549012 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14915244862.

rs1491524486 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 19:49513712 (GRCh38)
19:50016969 (GRCh37)
Canonical SPDI:: NC_000019.10:49513711:TT:
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.49513712_49513713del, NC_000019.9:g.50016969_50016970del

Select item 14910968533.

rs1491096853 has merged into rs57437959 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:49519840 (GRCh38)
19:50023097 (GRCh37)
Canonical SPDI:: NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:49519826:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000019.10:g.49519840_49519848del, NC_000019.10:g.49519844_49519848del, NC_000019.10:g.49519845_49519848del, NC_000019.10:g.49519846_49519848del, NC_000019.10:g.49519847_49519848del, NC_000019.10:g.49519848del, NC_000019.10:g.49519848dup, NC_000019.10:g.49519847_49519848dup, NC_000019.10:g.49519846_49519848dup, NC_000019.10:g.49519845_49519848dup, NC_000019.10:g.49519844_49519848dup, NC_000019.10:g.49519843_49519848dup, NC_000019.10:g.49519842_49519848dup, NC_000019.10:g.49519841_49519848dup, NC_000019.10:g.49519840_49519848dup, NC_000019.10:g.49519836_49519848dup, NC_000019.10:g.49519848_49519849insTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000019.9:g.50023097_50023105del, NC_000019.9:g.50023101_50023105del, NC_000019.9:g.50023102_50023105del, NC_000019.9:g.50023103_50023105del, NC_000019.9:g.50023104_50023105del, NC_000019.9:g.50023105del, NC_000019.9:g.50023105dup, NC_000019.9:g.50023104_50023105dup, NC_000019.9:g.50023103_50023105dup, NC_000019.9:g.50023102_50023105dup, NC_000019.9:g.50023101_50023105dup, NC_000019.9:g.50023100_50023105dup, NC_000019.9:g.50023099_50023105dup, NC_000019.9:g.50023098_50023105dup, NC_000019.9:g.50023097_50023105dup, NC_000019.9:g.50023093_50023105dup, NC_000019.9:g.50023105_50023106insTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14910461904.

rs1491046190 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 19:49513749 (GRCh38)
19:50017006 (GRCh37)
Canonical SPDI:: NC_000019.10:49513748:CG:
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.49513749_49513750del, NC_000019.9:g.50017006_50017007del

Select item 14910335035.

rs1491033503 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 19:49519488 (GRCh38)
19:50022745 (GRCh37)
Canonical SPDI:: NC_000019.10:49519487:CCCCC:CCCC,NC_000019.10:49519487:CCCCC:CCCCCC
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.49519492del, NC_000019.10:g.49519492dup, NC_000019.9:g.50022749del, NC_000019.9:g.50022749dup

Select item 14909553706.

rs1490955370 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:49514116 (GRCh38)
19:50017373 (GRCh37)
Canonical SPDI:: NC_000019.10:49514115:A:G
Gene:: FCGRT (Varview)
Functional Consequence:: 5_prime_UTR_variant,missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000019.10:g.49514116A>G, NC_000019.9:g.50017373A>G, NM_004107.5:c.308A>G, NM_004107.4:c.308A>G, NM_001136019.3:c.308A>G, NM_001136019.2:c.308A>G, XM_047438411.1:c.-113A>G, XM_047438409.1:c.308A>G, XM_047438408.1:c.308A>G, NM_001411064.1:c.308A>G, XM_047438410.1:c.308A>G, XM_047438412.1:c.308A>G, NP_004098.1:p.Lys103Arg, NP_001129491.1:p.Lys103Arg, XP_047294365.1:p.Lys103Arg, XP_047294364.1:p.Lys103Arg, XP_047294366.1:p.Lys103Arg, XP_047294368.1:p.Lys103Arg

Select item 14908362597.

rs1490836259 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:49520939 (GRCh38)
19:50024196 (GRCh37)
Canonical SPDI:: NC_000019.10:49520938:C:T
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.49520939C>T, NC_000019.9:g.50024196C>T

Select item 14907701958.

rs1490770195 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 19:49520119 (GRCh38)
19:50023376 (GRCh37)
Canonical SPDI:: NC_000019.10:49520118:CC:C
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.49520120del, NC_000019.9:g.50023377del

Select item 14907573979.

rs1490757397 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 19:49523855 (GRCh38)
19:50027112 (GRCh37)
Canonical SPDI:: NC_000019.10:49523854:A:G,NC_000019.10:49523854:A:T
Gene:: FCGRT (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00006/1 (ALFA)
HGVS:: NC_000019.10:g.49523855A>G, NC_000019.10:g.49523855A>T, NC_000019.9:g.50027112A>G, NC_000019.9:g.50027112A>T

Select item 149057131010.

rs1490571310 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:49514229 (GRCh38)
19:50017486 (GRCh37)
Canonical SPDI:: NC_000019.10:49514228:G:A
Gene:: FCGRT (Varview)
Functional Consequence:: 5_prime_UTR_variant,missense_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.49514229G>A, NC_000019.9:g.50017486G>A, NM_004107.5:c.344G>A, NM_004107.4:c.344G>A, NM_001136019.3:c.344G>A, NM_001136019.2:c.344G>A, XM_047438411.1:c.-77G>A, XM_047438408.1:c.344G>A, XM_047438410.1:c.344G>A, XM_047438412.1:c.344G>A, NP_004098.1:p.Gly115Asp, NP_001129491.1:p.Gly115Asp, XP_047294364.1:p.Gly115Asp, XP_047294366.1:p.Gly115Asp, XP_047294368.1:p.Gly115Asp

Select item 149046326011.

rs1490463260 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:49523057 (GRCh38)
19:50026314 (GRCh37)
Canonical SPDI:: NC_000019.10:49523056:G:A
Gene:: FCGRT (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (Korea1K)
A=0.00068/2 (KOREAN)
A=0.00081/14 (TOMMO)
HGVS:: NC_000019.10:g.49523057G>A, NC_000019.9:g.50026314G>A

Select item 148981344412.

rs1489813444 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 19:49526914 (GRCh38)
19:50030171 (GRCh37)
Canonical SPDI:: NC_000019.10:49526913:C:G,NC_000019.10:49526913:C:T
Gene:: FCGRT (Varview), RCN3 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.49526914C>G, NC_000019.10:g.49526914C>T, NC_000019.9:g.50030171C>G, NC_000019.9:g.50030171C>T

Select item 148972987513.

rs1489729875 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:49523649 (GRCh38)
19:50026906 (GRCh37)
Canonical SPDI:: NC_000019.10:49523648:A:G
Gene:: FCGRT (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.49523649A>G, NC_000019.9:g.50026906A>G

Select item 148971443514.

rs1489714435 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:49514653 (GRCh38)
19:50017910 (GRCh37)
Canonical SPDI:: NC_000019.10:49514652:G:A,NC_000019.10:49514652:G:C
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000071/2 (TOMMO)
C=0.000685/2 (KOREAN)
HGVS:: NC_000019.10:g.49514653G>A, NC_000019.10:g.49514653G>C, NC_000019.9:g.50017910G>A, NC_000019.9:g.50017910G>C

Select item 148954470415.

rs1489544704 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:49512945 (GRCh38)
19:50016202 (GRCh37)
Canonical SPDI:: NC_000019.10:49512944:G:T
Gene:: FCGRT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/1 (GnomAD)
HGVS:: NC_000019.10:g.49512945G>T, NC_000019.9:g.50016202G>T

Select item 148942852516.

rs1489428525 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:49520569 (GRCh38)
19:50023826 (GRCh37)
Canonical SPDI:: NC_000019.10:49520568:C:T
Gene:: FCGRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.49520569C>T, NC_000019.9:g.50023826C>T

Select item 148918833517.

rs1489188335 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:49511604 (GRCh38)
19:50014861 (GRCh37)
Canonical SPDI:: NC_000019.10:49511603:G:A,NC_000019.10:49511603:G:C
Gene:: FCGRT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000034/9 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.49511604G>A, NC_000019.10:g.49511604G>C, NC_000019.9:g.50014861G>A, NC_000019.9:g.50014861G>C

Select item 148875630618.

rs1488756306 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 19:49524956 (GRCh38)
19:50028213 (GRCh37)
Canonical SPDI:: NC_000019.10:49524955:C:A,NC_000019.10:49524955:C:G,NC_000019.10:49524955:C:T
Gene:: FCGRT (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00005/1 (ALFA)
HGVS:: NC_000019.10:g.49524956C>A, NC_000019.10:g.49524956C>G, NC_000019.10:g.49524956C>T, NC_000019.9:g.50028213C>A, NC_000019.9:g.50028213C>G, NC_000019.9:g.50028213C>T

Select item 148875108219.

rs1488751082 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:49512904 (GRCh38)
19:50016161 (GRCh37)
Canonical SPDI:: NC_000019.10:49512903:T:G
Gene:: FCGRT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00004/2 (GnomAD)
HGVS:: NC_000019.10:g.49512904T>G, NC_000019.9:g.50016161T>G

Select item 148874769620.

rs1488747696 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:49524318 (GRCh38)
19:50027575 (GRCh37)
Canonical SPDI:: NC_000019.10:49524317:C:T
Gene:: FCGRT (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.49524318C>T, NC_000019.9:g.50027575C>T

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