SNP Links for Gene (Select 219983) - SNP

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Select item 14903351181.

rs1490335118 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 11:59455122 (GRCh38)
11:59222596 (GRCh37)
Canonical SPDI:: NC_000011.10:59455122:GGGGG:GGGGGG
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGG=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.59455127dup, NC_000011.9:g.59222600dup

Select item 14893080242.

rs1489308024 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:59456448 (GRCh38)
11:59223921 (GRCh37)
Canonical SPDI:: NC_000011.10:59456447:G:A,NC_000011.10:59456447:G:C
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00007/1 (ALFA)
HGVS:: NC_000011.10:g.59456448G>A, NC_000011.10:g.59456448G>C, NC_000011.9:g.59223921G>A, NC_000011.9:g.59223921G>C

Select item 14880333053.

rs1488033305 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:59456523 (GRCh38)
11:59223996 (GRCh37)
Canonical SPDI:: NC_000011.10:59456522:C:T
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000071/1 (TOMMO)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.59456523C>T, NC_000011.9:g.59223996C>T

Select item 14877617554.

rs1487761755 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:59457904 (GRCh38)
11:59225377 (GRCh37)
Canonical SPDI:: NC_000011.10:59457903:G:A,NC_000011.10:59457903:G:C
Gene:: OR4D6 (Varview)
Functional Consequence:: stop_lost,synonymous_variant,terminator_codon_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.59457904G>A, NC_000011.10:g.59457904G>C, NC_000011.9:g.59225377G>A, NC_000011.9:g.59225377G>C, NM_001004708.1:c.944G>A, NM_001004708.1:c.944G>C, NP_001004708.1:p.Ter315Ser

Select item 14875695745.

rs1487569574 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:59456976 (GRCh38)
11:59224449 (GRCh37)
Canonical SPDI:: NC_000011.10:59456975:C:T
Gene:: OR4D6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.59456976C>T, NC_000011.9:g.59224449C>T, NM_001004708.1:c.16C>T, NP_001004708.1:p.His6Tyr

Select item 14870553206.

rs1487055320 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:59457490 (GRCh38)
11:59224963 (GRCh37)
Canonical SPDI:: NC_000011.10:59457489:T:C
Gene:: OR4D6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.59457490T>C, NC_000011.9:g.59224963T>C, NM_001004708.1:c.530T>C, NP_001004708.1:p.Phe177Ser

Select item 14865410217.

rs1486541021 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 11:59455630 (GRCh38)
11:59223103 (GRCh37)
Canonical SPDI:: NC_000011.10:59455629:TT:T
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.59455631del, NC_000011.9:g.59223104del

Select item 14863666328.

rs1486366632 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:59456680 (GRCh38)
11:59224153 (GRCh37)
Canonical SPDI:: NC_000011.10:59456679:G:T
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.59456680G>T, NC_000011.9:g.59224153G>T

Select item 14862468589.

rs1486246858 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:59456005 (GRCh38)
11:59223478 (GRCh37)
Canonical SPDI:: NC_000011.10:59456004:T:C
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.59456005T>C, NC_000011.9:g.59223478T>C

Select item 148590595510.

rs1485905955 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:59455638 (GRCh38)
11:59223111 (GRCh37)
Canonical SPDI:: NC_000011.10:59455637:T:A
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.59455638T>A, NC_000011.9:g.59223111T>A

Select item 148587531211.

rs1485875312 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:59457260 (GRCh38)
11:59224733 (GRCh37)
Canonical SPDI:: NC_000011.10:59457259:G:A,NC_000011.10:59457259:G:C
Gene:: OR4D6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000056/2 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
C=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.59457260G>A, NC_000011.10:g.59457260G>C, NC_000011.9:g.59224733G>A, NC_000011.9:g.59224733G>C, NM_001004708.1:c.300G>A, NM_001004708.1:c.300G>C, NP_001004708.1:p.Gln100His

Select item 148527362212.

rs1485273622 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:59455740 (GRCh38)
11:59223213 (GRCh37)
Canonical SPDI:: NC_000011.10:59455739:C:T
Gene:: OR4D6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.59455740C>T, NC_000011.9:g.59223213C>T

Select item 148233617313.

rs1482336173 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:59457932 (GRCh38)
11:59225405 (GRCh37)
Canonical SPDI:: NC_000011.10:59457931:T:C
Gene:: OR4D6 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000011.10:g.59457932T>C, NC_000011.9:g.59225405T>C

Select item 148199492814.

rs1481994928 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:59456545 (GRCh38)
11:59224019 (GRCh37)
Canonical SPDI:: NC_000011.10:59456545:AA:AAA
Gene:: OR4D6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.59456547dup, NC_000011.9:g.59224020dup

Select item 148178329815.

rs1481783298 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:59457565 (GRCh38)
11:59225038 (GRCh37)
Canonical SPDI:: NC_000011.10:59457564:A:G
Gene:: OR4D6 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.59457565A>G, NC_000011.9:g.59225038A>G, NM_001004708.1:c.605A>G, NP_001004708.1:p.Asn202Ser

Select item 147952055616.

rs1479520556 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:59455469 (GRCh38)
11:59222942 (GRCh37)
Canonical SPDI:: NC_000011.10:59455468:C:T
Gene:: OR4D6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.59455469C>T, NC_000011.9:g.59222942C>T

Select item 147929710717.

rs1479297107 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:59455935 (GRCh38)
11:59223408 (GRCh37)
Canonical SPDI:: NC_000011.10:59455934:C:G
Gene:: OR4D6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.59455935C>G, NC_000011.9:g.59223408C>G

Select item 147759785218.

rs1477597852 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGGAGCTTTTCATGATCT>- [Show Flanks]
Chromosome:: 11:59457544 (GRCh38)
11:59225017 (GRCh37)
Canonical SPDI:: NC_000011.10:59457542:TTGGAGCTTTTCATGATCT:T
Gene:: OR4D6 (Varview)
Functional Consequence:: inframe_deletion,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.59457544_59457561del, NC_000011.9:g.59225017_59225034del, NM_001004708.1:c.584_601del, NP_001004708.1:p.Leu195_Ile200del

Select item 147614108419.

rs1476141084 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:59457957 (GRCh38)
11:59225430 (GRCh37)
Canonical SPDI:: NC_000011.10:59457956:A:T
Gene:: OR4D6 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.59457957A>T, NC_000011.9:g.59225430A>T

Select item 147610675220.

rs1476106752 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:59456782 (GRCh38)
11:59224255 (GRCh37)
Canonical SPDI:: NC_000011.10:59456781:A:G
Gene:: OR4D6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.59456782A>G, NC_000011.9:g.59224255A>G

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