SNP Links for Gene (Select 219437) - SNP

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Select item 14908759971.

rs1490875997 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55811024 (GRCh38)
11:55578500 (GRCh37)
Canonical SPDI:: NC_000011.10:55811023:C:T
Gene:: OR5L1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55811024C>T, NC_000011.9:g.55578500C>T, NG_052620.1:g.4658C>T

Select item 14907213342.

rs1490721334 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55810983 (GRCh38)
11:55578459 (GRCh37)
Canonical SPDI:: NC_000011.10:55810982:G:A
Gene:: OR5L1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000008/1 (GnomAD)
HGVS:: NC_000011.10:g.55810983G>A, NC_000011.9:g.55578459G>A, NG_052620.1:g.4617G>A

Select item 14881251033.

rs1488125103 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:55810118 (GRCh38)
11:55577594 (GRCh37)
Canonical SPDI:: NC_000011.10:55810117:A:G
Gene:: OR5L1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.55810118A>G, NC_000011.9:g.55577594A>G, NG_052620.1:g.3752A>G

Select item 14875438234.

rs1487543823 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:55809731 (GRCh38)
11:55577207 (GRCh37)
Canonical SPDI:: NC_000011.10:55809730:C:G
Gene:: OR5L1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.55809731C>G, NC_000011.9:g.55577207C>G, NG_052620.1:g.3365C>G

Select item 14862134685.

rs1486213468 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55812232 (GRCh38)
11:55579708 (GRCh37)
Canonical SPDI:: NC_000011.10:55812231:C:T
Gene:: OR5L1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55812232C>T, NC_000011.9:g.55579708C>T, NG_052620.1:g.5866C>T, NM_001004738.2:c.766C>T, NM_001004738.1:c.766C>T, NP_001004738.1:p.Leu256Phe

Select item 14854331106.

rs1485433110 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55810280 (GRCh38)
11:55577756 (GRCh37)
Canonical SPDI:: NC_000011.10:55810279:G:A
Gene:: OR5L1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.55810280G>A, NC_000011.9:g.55577756G>A, NG_052620.1:g.3914G>A

Select item 14851342597.

rs1485134259 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:55811475 (GRCh38)
11:55578951 (GRCh37)
Canonical SPDI:: NC_000011.10:55811474:G:C
Gene:: OR5L1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55811475G>C, NC_000011.9:g.55578951G>C, NG_052620.1:g.5109G>C, NM_001004738.2:c.9G>C, NM_001004738.1:c.9G>C, NP_001004738.1:p.Lys3Asn

Select item 14819246718.

rs1481924671 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 11:55812545 (GRCh38)
11:55580021 (GRCh37)
Canonical SPDI:: NC_000011.10:55812544:TT:T
Gene:: OR5L1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55812546del, NC_000011.9:g.55580022del, NG_052620.1:g.6180del

Select item 14811146809.

rs1481114680 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:55811053 (GRCh38)
11:55578529 (GRCh37)
Canonical SPDI:: NC_000011.10:55811052:G:A,NC_000011.10:55811052:G:T
Gene:: OR5L1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.55811053G>A, NC_000011.10:g.55811053G>T, NC_000011.9:g.55578529G>A, NC_000011.9:g.55578529G>T, NG_052620.1:g.4687G>A, NG_052620.1:g.4687G>T

Select item 148098829510.

rs1480988295 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:55811264 (GRCh38)
11:55578740 (GRCh37)
Canonical SPDI:: NC_000011.10:55811263:A:G
Gene:: OR5L1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55811264A>G, NC_000011.9:g.55578740A>G, NG_052620.1:g.4898A>G

Select item 148074255711.

rs1480742557 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:55812129 (GRCh38)
11:55579605 (GRCh37)
Canonical SPDI:: NC_000011.10:55812128:T:C
Gene:: OR5L1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55812129T>C, NC_000011.9:g.55579605T>C, NG_052620.1:g.5763T>C, NM_001004738.2:c.663T>C, NM_001004738.1:c.663T>C

Select item 147899820212.

rs1478998202 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:55810202 (GRCh38)
11:55577678 (GRCh37)
Canonical SPDI:: NC_000011.10:55810201:T:G
Gene:: OR5L1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55810202T>G, NC_000011.9:g.55577678T>G, NG_052620.1:g.3836T>G

Select item 147884237213.

rs1478842372 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:55809897 (GRCh38)
11:55577373 (GRCh37)
Canonical SPDI:: NC_000011.10:55809896:A:C
Gene:: OR5L1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.001369/4 (KOREAN)
HGVS:: NC_000011.10:g.55809897A>C, NC_000011.9:g.55577373A>C, NG_052620.1:g.3531A>C

Select item 147720201114.

rs1477202011 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55809524 (GRCh38)
11:55577000 (GRCh37)
Canonical SPDI:: NC_000011.10:55809523:C:T
Gene:: OR5L1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.55809524C>T, NC_000011.9:g.55577000C>T, NG_052620.1:g.3158C>T

Select item 147629493815.

rs1476294938 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:55812245 (GRCh38)
11:55579721 (GRCh37)
Canonical SPDI:: NC_000011.10:55812244:G:T
Gene:: OR5L1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55812245G>T, NC_000011.9:g.55579721G>T, NG_052620.1:g.5879G>T, NM_001004738.2:c.779G>T, NM_001004738.1:c.779G>T, NP_001004738.1:p.Cys260Phe

Select item 147564799516.

rs1475647995 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55811304 (GRCh38)
11:55578780 (GRCh37)
Canonical SPDI:: NC_000011.10:55811303:C:T
Gene:: OR5L1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55811304C>T, NC_000011.9:g.55578780C>T, NG_052620.1:g.4938C>T

Select item 147432996617.

rs1474329966 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55811760 (GRCh38)
11:55579236 (GRCh37)
Canonical SPDI:: NC_000011.10:55811759:G:A
Gene:: OR5L1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55811760G>A, NC_000011.9:g.55579236G>A, NG_052620.1:g.5394G>A, NM_001004738.2:c.294G>A, NM_001004738.1:c.294G>A, NP_001004738.1:p.Met98Ile

Select item 147414846918.

rs1474148469 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:55811927 (GRCh38)
11:55579403 (GRCh37)
Canonical SPDI:: NC_000011.10:55811926:T:G
Gene:: OR5L1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by cluster
MAF:: G=0.000008/2 (GnomAD_exomes)
G=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.55811927T>G, NC_000011.9:g.55579403T>G, NG_052620.1:g.5561T>G, NM_001004738.2:c.461T>G, NM_001004738.1:c.461T>G, NP_001004738.1:p.Val154Gly

Select item 147402207619.

rs1474022076 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:55812968 (GRCh38)
11:55580444 (GRCh37)
Canonical SPDI:: NC_000011.10:55812967:T:G
Gene:: OR5L1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
HGVS:: NC_000011.10:g.55812968T>G, NC_000011.9:g.55580444T>G, NG_052620.1:g.6602T>G

Select item 147368166720.

rs1473681667 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:55809561 (GRCh38)
11:55577037 (GRCh37)
Canonical SPDI:: NC_000011.10:55809560:A:C
Gene:: OR5L1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55809561A>C, NC_000011.9:g.55577037A>C, NG_052620.1:g.3195A>C

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