SNP Links for Gene (Select 202299) - SNP

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Items: 1 to 20 of 2458

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Select item 14906923991.

rs1490692399 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 5:95850954 (GRCh38)
5:95186658 (GRCh37)
Canonical SPDI:: NC_000005.10:95850953:T:G
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000635/12 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000143/20 (GnomAD)
G=0.002679/12 (Estonian)
HGVS:: NC_000005.10:g.95850954T>G, NC_000005.9:g.95186658T>G

Select item 14905683782.

rs1490568378 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:95854330 (GRCh38)
5:95190034 (GRCh37)
Canonical SPDI:: NC_000005.10:95854329:C:G,NC_000005.10:95854329:C:T
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.95854330C>G, NC_000005.10:g.95854330C>T, NC_000005.9:g.95190034C>G, NC_000005.9:g.95190034C>T

Select item 14897394243.

rs1489739424 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:95852800 (GRCh38)
5:95188504 (GRCh37)
Canonical SPDI:: NC_000005.10:95852799:C:G
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000005.10:g.95852800C>G, NC_000005.9:g.95188504C>G, NM_175616.2:c.-157C>G

Select item 14897347444.

rs1489734744 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:95854885 (GRCh38)
5:95190589 (GRCh37)
Canonical SPDI:: NC_000005.10:95854884:T:C
Gene:: LINC01554 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.95854885T>C, NC_000005.9:g.95190589T>C

Select item 14896727505.

rs1489672750 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:95853796 (GRCh38)
5:95189500 (GRCh37)
Canonical SPDI:: NC_000005.10:95853795:T:C
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000672/11 (TOMMO)
C=0.002183/4 (Korea1K)
C=0.002738/8 (KOREAN)
HGVS:: NC_000005.10:g.95853796T>C, NC_000005.9:g.95189500T>C

Select item 14896459906.

rs1489645990 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 5:95851899 (GRCh38)
5:95187603 (GRCh37)
Canonical SPDI:: NC_000005.10:95851898:T:A,NC_000005.10:95851898:T:C
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000005.10:g.95851899T>A, NC_000005.10:g.95851899T>C, NC_000005.9:g.95187603T>A, NC_000005.9:g.95187603T>C

Select item 14892590477.

rs1489259047 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:95852359 (GRCh38)
5:95188063 (GRCh37)
Canonical SPDI:: NC_000005.10:95852358:T:A
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.95852359T>A, NC_000005.9:g.95188063T>A, NR_026936.1:n.128T>A

Select item 14892203608.

rs1489220360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:95851647 (GRCh38)
5:95187351 (GRCh37)
Canonical SPDI:: NC_000005.10:95851646:G:T
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.95851647G>T, NC_000005.9:g.95187351G>T

Select item 14890942379.

rs1489094237 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:95860016 (GRCh38)
5:95195720 (GRCh37)
Canonical SPDI:: NC_000005.10:95860015:C:T
Gene:: LINC01554 (Varview), LOC105379091 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.95860016C>T, NC_000005.9:g.95195720C>T, NM_175616.2:c.*999C>T, NR_026936.1:n.1800C>T

Select item 148893558610.

rs1488935586 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:95859566 (GRCh38)
5:95195270 (GRCh37)
Canonical SPDI:: NC_000005.10:95859565:G:A
Gene:: LINC01554 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.95859566G>A, NC_000005.9:g.95195270G>A, NM_175616.2:c.*546G>A, NR_026936.1:n.1350G>A

Select item 148823385811.

rs1488233858 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:95851249 (GRCh38)
5:95186953 (GRCh37)
Canonical SPDI:: NC_000005.10:95851248:C:T
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000005.10:g.95851249C>T, NC_000005.9:g.95186953C>T

Select item 148774642112.

rs1487746421 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:95853814 (GRCh38)
5:95189518 (GRCh37)
Canonical SPDI:: NC_000005.10:95853813:G:A
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.95853814G>A, NC_000005.9:g.95189518G>A

Select item 148768377513.

rs1487683775 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:95852890 (GRCh38)
5:95188594 (GRCh37)
Canonical SPDI:: NC_000005.10:95852889:C:T
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.95852890C>T, NC_000005.9:g.95188594C>T, NM_175616.2:c.-67C>T

Select item 148763745114.

rs1487637451 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:95859418 (GRCh38)
5:95195122 (GRCh37)
Canonical SPDI:: NC_000005.10:95859417:A:G
Gene:: LINC01554 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.95859418A>G, NC_000005.9:g.95195122A>G, NM_175616.2:c.*398A>G, NR_026936.1:n.1202A>G

Select item 148673796215.

rs1486737962 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 5:95851101 (GRCh38)
5:95186805 (GRCh37)
Canonical SPDI:: NC_000005.10:95851100:GGG:GG
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.95851103del, NC_000005.9:g.95186807del

Select item 148637299116.

rs1486372991 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:95851404 (GRCh38)
5:95187108 (GRCh37)
Canonical SPDI:: NC_000005.10:95851403:G:A
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000005.10:g.95851404G>A, NC_000005.9:g.95187108G>A

Select item 148623002317.

rs1486230023 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:95856806 (GRCh38)
5:95192510 (GRCh37)
Canonical SPDI:: NC_000005.10:95856805:G:A
Gene:: LINC01554 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.95856806G>A, NC_000005.9:g.95192510G>A

Select item 148610507218.

rs1486105072 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:95853945 (GRCh38)
5:95189649 (GRCh37)
Canonical SPDI:: NC_000005.10:95853944:G:A
Gene:: LINC01554 (Varview), LOC124901029 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.95853945G>A, NC_000005.9:g.95189649G>A

Select item 148590250719.

rs1485902507 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:95857424 (GRCh38)
5:95193128 (GRCh37)
Canonical SPDI:: NC_000005.10:95857423:T:C
Gene:: LINC01554 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.95857424T>C, NC_000005.9:g.95193128T>C

Select item 148567280120.

rs1485672801 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 5:95858670 (GRCh38)
5:95194374 (GRCh37)
Canonical SPDI:: NC_000005.10:95858669:T:
Gene:: LINC01554 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.95858670del, NC_000005.9:g.95194374del

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