SNP Links for Gene (Select 196993) - SNP

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Select item 14908492471.

rs1490849247 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:71114161 (GRCh38)
15:71406500 (GRCh37)
Canonical SPDI:: NC_000015.10:71114160:G:A
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.71114161G>A, NC_000015.9:g.71406500G>A

Select item 14904162872.

rs1490416287 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:71111971 (GRCh38)
15:71404310 (GRCh37)
Canonical SPDI:: NC_000015.10:71111970:A:G
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000038/10 (TOPMED)
HGVS:: NC_000015.10:g.71111971A>G, NC_000015.9:g.71404310A>G

Select item 14898323323.

rs1489832332 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:71112640 (GRCh38)
15:71404979 (GRCh37)
Canonical SPDI:: NC_000015.10:71112639:C:G
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.71112640C>G, NC_000015.9:g.71404979C>G

Select item 14897157644.

rs1489715764 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:71114625 (GRCh38)
15:71406964 (GRCh37)
Canonical SPDI:: NC_000015.10:71114624:C:G
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.71114625C>G, NC_000015.9:g.71406964C>G

Select item 14896136585.

rs1489613658 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:71113699 (GRCh38)
15:71406038 (GRCh37)
Canonical SPDI:: NC_000015.10:71113698:A:C
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.71113699A>C, NC_000015.9:g.71406038A>C, NR_168260.1:n.646T>G, NR_168259.1:n.441T>G, NM_001102658.1:c.-77T>G

Select item 14888931746.

rs1488893174 has merged into rs754745556 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,GG,GGGG [Show Flanks]
Chromosome:: 15:71112316 (GRCh38)
15:71404655 (GRCh37)
Canonical SPDI:: NC_000015.10:71112312:GGGGGG:GGG,NC_000015.10:71112312:GGGGGG:GGGGG,NC_000015.10:71112312:GGGGGG:GGGGGGG
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0./0 (ALFA)
-=0./0 (TWINSUK)
-=0.00004/1 (TOMMO)
-=0.00026/1 (ALSPAC)
-=0.00038/32 (GnomAD_exomes)
-=0.00065/7 (GoESP)
-=0.00077/9 (ExAC)
-=0.00826/37 (Estonian)
HGVS:: NC_000015.10:g.71112316_71112318del, NC_000015.10:g.71112318del, NC_000015.10:g.71112318dup, NC_000015.9:g.71404655_71404657del, NC_000015.9:g.71404657del, NC_000015.9:g.71404657dup

Select item 14887223237.

rs1488722323 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:71114236 (GRCh38)
15:71406575 (GRCh37)
Canonical SPDI:: NC_000015.10:71114235:C:G,NC_000015.10:71114235:C:T
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00031/5 (ALFA)
T=0.00856/25 (KOREAN)
HGVS:: NC_000015.10:g.71114236C>G, NC_000015.10:g.71114236C>T, NC_000015.9:g.71406575C>G, NC_000015.9:g.71406575C>T

Select item 14886702528.

rs1488670252 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:71116135 (GRCh38)
15:71408474 (GRCh37)
Canonical SPDI:: NC_000015.10:71116134:A:G
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.00003/8 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000015.10:g.71116135A>G, NC_000015.9:g.71408474A>G

Select item 14885071119.

rs1488507111 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:71111160 (GRCh38)
15:71403499 (GRCh37)
Canonical SPDI:: NC_000015.10:71111159:C:T
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.71111160C>T, NC_000015.9:g.71403499C>T, NR_168260.1:n.1128G>A, NR_168259.1:n.919G>A, NM_001102658.1:c.402G>A

Select item 148798657210.

rs1487986572 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:71111248 (GRCh38)
15:71403587 (GRCh37)
Canonical SPDI:: NC_000015.10:71111247:A:G
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.71111248A>G, NC_000015.9:g.71403587A>G, NR_168260.1:n.1040T>C, NR_168259.1:n.831T>C, NM_001102658.1:c.314T>C

Select item 148743703011.

rs1487437030 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:71112835 (GRCh38)
15:71405174 (GRCh37)
Canonical SPDI:: NC_000015.10:71112834:A:C
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.71112835A>C, NC_000015.9:g.71405174A>C

Select item 148732789512.

rs1487327895 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:71115488 (GRCh38)
15:71407827 (GRCh37)
Canonical SPDI:: NC_000015.10:71115487:G:T
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.71115488G>T, NC_000015.9:g.71407827G>T, NM_024817.3:c.-290G>T, NR_168260.1:n.17C>A, NR_168259.1:n.17C>A, NM_001102658.1:c.-501C>A

Select item 148690292413.

rs1486902924 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:71117418 (GRCh38)
15:71409757 (GRCh37)
Canonical SPDI:: NC_000015.10:71117417:C:T
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.71117418C>T, NC_000015.9:g.71409757C>T

Select item 148674683814.

rs1486746838 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 15:71110677 (GRCh38)
15:71403016 (GRCh37)
Canonical SPDI:: NC_000015.10:71110674:TTTT:TT
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.71110677_71110678del, NC_000015.9:g.71403016_71403017del, NR_168260.1:n.1612_1613del, NR_168259.1:n.1403_1404del, NM_001102658.1:c.*475_*476del

Select item 148662404815.

rs1486624048 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:71113707 (GRCh38)
15:71406046 (GRCh37)
Canonical SPDI:: NC_000015.10:71113706:G:A
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.71113707G>A, NC_000015.9:g.71406046G>A, NR_168260.1:n.638C>T, NR_168259.1:n.433C>T, NM_001102658.1:c.-85C>T

Select item 148597288916.

rs1485972889 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 15:71110807 (GRCh38)
15:71403146 (GRCh37)
Canonical SPDI:: NC_000015.10:71110804:TTTT:TT
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000015.10:g.71110807_71110808del, NC_000015.9:g.71403146_71403147del, NR_168260.1:n.1482_1483del, NR_168259.1:n.1273_1274del, NM_001102658.1:c.*345_*346del

Select item 148546867917.

rs1485468679 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:71114928 (GRCh38)
15:71407267 (GRCh37)
Canonical SPDI:: NC_000015.10:71114927:C:G,NC_000015.10:71114927:C:T
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000015.10:g.71114928C>G, NC_000015.10:g.71114928C>T, NC_000015.9:g.71407267C>G, NC_000015.9:g.71407267C>T, NR_168260.1:n.577G>C, NR_168260.1:n.577G>A

Select item 148543224918.

rs1485432249 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:71116464 (GRCh38)
15:71408803 (GRCh37)
Canonical SPDI:: NC_000015.10:71116463:A:C
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.71116464A>C, NC_000015.9:g.71408803A>C

Select item 148535927019.

rs1485359270 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:71112654 (GRCh38)
15:71404993 (GRCh37)
Canonical SPDI:: NC_000015.10:71112653:A:C
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.71112654A>C, NC_000015.9:g.71404993A>C

Select item 148499389620.

rs1484993896 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:71110253 (GRCh38)
15:71402592 (GRCh37)
Canonical SPDI:: NC_000015.10:71110252:A:T
Gene:: THSD4 (Varview), CT62 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.71110253A>T, NC_000015.9:g.71402592A>T, NR_168260.1:n.2035T>A, NR_168259.1:n.1826T>A, NM_001102658.1:c.*898T>A