SNP Links for Gene (Select 170627) - SNP

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Items: 1 to 20 of 1395

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Select item 14906657131.

rs1490665713 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:52815385 (GRCh38)
X:52844409 (GRCh37)
Canonical SPDI:: NC_000023.11:52815384:C:T
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.52815385C>T, NW_004070877.1:g.2528500C>T, NC_000023.10:g.52844409C>T

Select item 14906404472.

rs1490640447 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:52816907 (GRCh38)
X:52845931 (GRCh37)
Canonical SPDI:: NC_000023.11:52816906:G:A
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/2 (GnomAD)
A=0.000076/20 (TOPMED)
HGVS:: NC_000023.11:g.52816907G>A, NW_004070877.1:g.2530022G>A, NC_000023.10:g.52845931G>A

Select item 14901760533.

rs1490176053 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:52814785 (GRCh38)
X:52843809 (GRCh37)
Canonical SPDI:: NC_000023.11:52814784:T:C
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.52814785T>C, NW_004070877.1:g.2527900T>C, NC_000023.10:g.52843809T>C

Select item 14901498114.

rs1490149811 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:52816243 (GRCh38)
X:52845267 (GRCh37)
Canonical SPDI:: NC_000023.11:52816242:G:A
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (GnomAD)
A=0.000015/4 (TOPMED)
A=0.00009/2 (TOMMO)
HGVS:: NC_000023.11:g.52816243G>A, NW_004070877.1:g.2529358G>A, NC_000023.10:g.52845267G>A

Select item 14895744145.

rs1489574414 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:52814099 (GRCh38)
X:52843123 (GRCh37)
Canonical SPDI:: NC_000023.11:52814098:A:G
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.52814099A>G, NW_004070877.1:g.2527214A>G, NC_000023.10:g.52843123A>G

Select item 14895220266.

rs1489522026 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:52815575 (GRCh38)
X:52844599 (GRCh37)
Canonical SPDI:: NC_000023.11:52815574:C:G
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000076/8 (GnomAD)
G=0.000106/28 (TOPMED)
HGVS:: NC_000023.11:g.52815575C>G, NW_004070877.1:g.2528690C>G, NC_000023.10:g.52844599C>G

Select item 14890110527.

rs1489011052 has merged into rs371797802 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: X:52818601 (GRCh38)
X:52847626 (GRCh37)
Canonical SPDI:: NC_000023.11:52818601:G:GG
Gene:: XAGE5 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0.000142/2 (ALFA)
G=0.000086/9 (GnomAD)
G=0.000128/34 (TOPMED)
HGVS:: NC_000023.11:g.52818602dup, NW_004070877.1:g.2531717dup, NC_000023.10:g.52847626dup

Select item 14886161288.

rs1488616128 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:52812659 (GRCh38)
X:52841683 (GRCh37)
Canonical SPDI:: NC_000023.11:52812658:T:C
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.52812659T>C, NW_004070877.1:g.2525774T>C, NC_000023.10:g.52841683T>C

Select item 14885904879.

rs1488590487 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:52813432 (GRCh38)
X:52842456 (GRCh37)
Canonical SPDI:: NC_000023.11:52813431:A:G
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.52813432A>G, NW_004070877.1:g.2526547A>G, NC_000023.10:g.52842456A>G

Select item 148803767310.

rs1488037673 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:52812262 (GRCh38)
X:52841286 (GRCh37)
Canonical SPDI:: NC_000023.11:52812261:T:A
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant,splice_donor_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.52812262T>A, NW_004070877.1:g.2525377T>A, NC_000023.10:g.52841286T>A

Select item 148798638911.

rs1487986389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:52813616 (GRCh38)
X:52842640 (GRCh37)
Canonical SPDI:: NC_000023.11:52813615:C:T
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.52813616C>T, NW_004070877.1:g.2526731C>T, NC_000023.10:g.52842640C>T

Select item 148705326912.

rs1487053269 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:52811719 (GRCh38)
X:52840743 (GRCh37)
Canonical SPDI:: NC_000023.11:52811718:G:A
Gene:: XAGE5 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.52811719G>A, NW_004070877.1:g.2524834G>A, NC_000023.10:g.52840743G>A, NM_001386970.1:c.-9G>A

Select item 148700655913.

rs1487006559 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:52812964 (GRCh38)
X:52841988 (GRCh37)
Canonical SPDI:: NC_000023.11:52812963:A:C
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00003/8 (TOPMED)
HGVS:: NC_000023.11:g.52812964A>C, NW_004070877.1:g.2526079A>C, NC_000023.10:g.52841988A>C

Select item 148665184814.

rs1486651848 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:52811578 (GRCh38)
X:52840602 (GRCh37)
Canonical SPDI:: NC_000023.11:52811577:G:A
Gene:: XAGE5 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
A=0.000078/1 (TOMMO)
HGVS:: NC_000023.11:g.52811578G>A, NW_004070877.1:g.2524693G>A, NC_000023.10:g.52840602G>A, NM_001386970.1:c.-150G>A

Select item 148659861115.

rs1486598611 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:52812832 (GRCh38)
X:52841856 (GRCh37)
Canonical SPDI:: NC_000023.11:52812831:C:T
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000029/3 (GnomAD)
T=0.000038/10 (TOPMED)
HGVS:: NC_000023.11:g.52812832C>T, NW_004070877.1:g.2525947C>T, NC_000023.10:g.52841856C>T

Select item 148602346716.

rs1486023467 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:52812389 (GRCh38)
X:52841413 (GRCh37)
Canonical SPDI:: NC_000023.11:52812388:C:T
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.52812389C>T, NW_004070877.1:g.2525504C>T, NC_000023.10:g.52841413C>T

Select item 148577602817.

rs1485776028 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:52809780 (GRCh38)
X:52838804 (GRCh37)
Canonical SPDI:: NC_000023.11:52809779:C:T
Gene:: XAGE5 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.52809780C>T, NW_004070877.1:g.2522895C>T, NC_000023.10:g.52838804C>T

Select item 148508852018.

rs1485088520 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:52815731 (GRCh38)
X:52844755 (GRCh37)
Canonical SPDI:: NC_000023.11:52815730:A:G
Gene:: XAGE5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.52815731A>G, NW_004070877.1:g.2528846A>G, NC_000023.10:g.52844755A>G

Select item 148508644419.

rs1485086444 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: X:52810661 (GRCh38)
X:52839685 (GRCh37)
Canonical SPDI:: NC_000023.11:52810660:C:A,NC_000023.11:52810660:C:T
Gene:: XAGE5 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.52810661C>A, NC_000023.11:g.52810661C>T, NW_004070877.1:g.2523776C>A, NW_004070877.1:g.2523776C>T, NC_000023.10:g.52839685C>A, NC_000023.10:g.52839685C>T

Select item 148410446720.

rs1484104467 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:52809985 (GRCh38)
X:52839009 (GRCh37)
Canonical SPDI:: NC_000023.11:52809984:G:A
Gene:: XAGE5 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
G=0./0 (SGDP_PRJ)
A=0.000039/4 (GnomAD)
A=0.000057/15 (TOPMED)
HGVS:: NC_000023.11:g.52809985G>A, NW_004070877.1:g.2523100G>A, NC_000023.10:g.52839009G>A

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