SNP Links for Gene (Select 170572) - SNP

Links from Gene

Items: 1 to 20 of 2616

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Select item 14907772651.

rs1490777265 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:184053905 (GRCh38)
3:183771693 (GRCh37)
Canonical SPDI:: NC_000003.12:184053904:C:T
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.184053905C>T, NC_000003.11:g.183771693C>T, NG_012749.1:g.5859C>T, NG_083212.1:g.404C>T

Select item 14907204712.

rs1490720471 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:184051634 (GRCh38)
3:183769422 (GRCh37)
Canonical SPDI:: NC_000003.12:184051633:C:T
Gene:: HTR3C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.184051634C>T, NC_000003.11:g.183769422C>T, NG_012749.1:g.3588C>T

Select item 14904230283.

rs1490423028 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:184056242 (GRCh38)
3:183774030 (GRCh37)
Canonical SPDI:: NC_000003.12:184056241:A:G
Gene:: HTR3C (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.184056242A>G, NC_000003.11:g.183774030A>G, NG_012749.1:g.8196A>G, NM_130770.3:c.345A>G, NM_130770.2:c.345A>G

Select item 14903839354.

rs1490383935 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:184054691 (GRCh38)
3:183772479 (GRCh37)
Canonical SPDI:: NC_000003.12:184054690:C:T
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000003.12:g.184054691C>T, NC_000003.11:g.183772479C>T, NG_012749.1:g.6645C>T, NG_083212.1:g.1190C>T

Select item 14897927065.

rs1489792706 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AAAAAAAAAAAAAAAAAAAAAAAAACAA,AAAAAAAACAA [Show Flanks]
Chromosome:: 3:184055911 (GRCh38)
3:183773700 (GRCh37)
Canonical SPDI:: NC_000003.12:184055911:AA:AAAAAAAAAAAAAAAAAAAAAAAAAAACAA,NC_000003.12:184055911:AA:AAAAAAAAAACAA
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAAAAAAAAAAAAAAAAAAAAAAAAACAA=0.000224/1 (ALFA)
AAAAAAAAAAC=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.184055912_184055913A[27]CAA[1], NC_000003.12:g.184055912_184055913A[10]CAA[1], NC_000003.11:g.183773700_183773701A[27]CAA[1], NC_000003.11:g.183773700_183773701A[10]CAA[1], NG_012749.1:g.7866_7867A[27]CAA[1], NG_012749.1:g.7866_7867A[10]CAA[1]

Select item 14894420566.

rs1489442056 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:184056537 (GRCh38)
3:183774325 (GRCh37)
Canonical SPDI:: NC_000003.12:184056536:A:C
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.184056537A>C, NC_000003.11:g.183774325A>C, NG_012749.1:g.8491A>C

Select item 14888449557.

rs1488844955 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 3:184059020 (GRCh38)
3:183776808 (GRCh37)
Canonical SPDI:: NC_000003.12:184059019:C:G,NC_000003.12:184059019:C:T
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.184059020C>G, NC_000003.12:g.184059020C>T, NC_000003.11:g.183776808C>G, NC_000003.11:g.183776808C>T, NG_012749.1:g.10974C>G, NG_012749.1:g.10974C>T

Select item 14887962728.

rs1488796272 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 3:184054484 (GRCh38)
3:183772273 (GRCh37)
Canonical SPDI:: NC_000003.12:184054484:A:AA
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.184054485dup, NC_000003.11:g.183772273dup, NG_012749.1:g.6439dup, NG_083212.1:g.984dup

Select item 14877644569.

rs1487764456 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>- [Show Flanks]
Chromosome:: 3:184057747 (GRCh38)
3:183775535 (GRCh37)
Canonical SPDI:: NC_000003.12:184057744:AAAA:AA
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAA=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000003.12:g.184057747_184057748del, NC_000003.11:g.183775535_183775536del, NG_012749.1:g.9701_9702del

Select item 148748178910.

rs1487481789 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:184055839 (GRCh38)
3:183773627 (GRCh37)
Canonical SPDI:: NC_000003.12:184055838:G:A
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.184055839G>A, NC_000003.11:g.183773627G>A, NG_012749.1:g.7793G>A

Select item 148745010011.

rs1487450100 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:184056666 (GRCh38)
3:183774454 (GRCh37)
Canonical SPDI:: NC_000003.12:184056665:T:A
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.184056666T>A, NC_000003.11:g.183774454T>A, NG_012749.1:g.8620T>A

Select item 148690077512.

rs1486900775 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 3:184052165 (GRCh38)
3:183769953 (GRCh37)
Canonical SPDI:: NC_000003.12:184052164:T:C,NC_000003.12:184052164:T:G
Gene:: HTR3C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.184052165T>C, NC_000003.12:g.184052165T>G, NC_000003.11:g.183769953T>C, NC_000003.11:g.183769953T>G, NG_012749.1:g.4119T>C, NG_012749.1:g.4119T>G

Select item 148689656413.

rs1486896564 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 3:184061124 (GRCh38)
3:183778912 (GRCh37)
Canonical SPDI:: NC_000003.12:184061123:A:
Gene:: HTR3C (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000003.12:g.184061124del, NC_000003.11:g.183778912del, NG_012749.1:g.13078del

Select item 148619131714.

rs1486191317 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:184056870 (GRCh38)
3:183774658 (GRCh37)
Canonical SPDI:: NC_000003.12:184056869:A:G
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.184056870A>G, NC_000003.11:g.183774658A>G, NG_012749.1:g.8824A>G

Select item 148610366015.

rs1486103660 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:184059477 (GRCh38)
3:183777265 (GRCh37)
Canonical SPDI:: NC_000003.12:184059476:G:A
Gene:: HTR3C (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.184059477G>A, NC_000003.11:g.183777265G>A, NG_012749.1:g.11431G>A, NM_130770.3:c.762G>A, NM_130770.2:c.762G>A

Select item 148573025816.

rs1485730258 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:184051360 (GRCh38)
3:183769148 (GRCh37)
Canonical SPDI:: NC_000003.12:184051359:A:G
Gene:: HTR3C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.184051360A>G, NC_000003.11:g.183769148A>G, NG_012749.1:g.3314A>G

Select item 148534387717.

rs1485343877 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:184051600 (GRCh38)
3:183769388 (GRCh37)
Canonical SPDI:: NC_000003.12:184051599:C:T
Gene:: HTR3C (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.184051600C>T, NC_000003.11:g.183769388C>T, NG_012749.1:g.3554C>T

Select item 148486035818.

rs1484860358 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:184058445 (GRCh38)
3:183776233 (GRCh37)
Canonical SPDI:: NC_000003.12:184058444:G:A
Gene:: HTR3C (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000003.12:g.184058445G>A, NC_000003.11:g.183776233G>A, NG_012749.1:g.10399G>A, NM_130770.3:c.578G>A, NM_130770.2:c.578G>A, NP_570126.2:p.Gly193Asp

Select item 148402986619.

rs1484029866 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>- [Show Flanks]
Chromosome:: 3:184053621 (GRCh38)
3:183771409 (GRCh37)
Canonical SPDI:: NC_000003.12:184053617:AGAGAGA:AGA
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000038/10 (TOPMED)
HGVS:: NC_000003.12:g.184053619GA[1], NC_000003.11:g.183771407GA[1], NG_012749.1:g.5573GA[1], NG_083212.1:g.118GA[1]

Select item 148391704320.

rs1483917043 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:184054607 (GRCh38)
3:183772395 (GRCh37)
Canonical SPDI:: NC_000003.12:184054606:G:A
Gene:: HTR3C (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.184054607G>A, NC_000003.11:g.183772395G>A, NG_012749.1:g.6561G>A, NG_083212.1:g.1106G>A

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