SNP Links for Gene (Select 168741) - SNP

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Select item 14915461061.

rs1491546106 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 7:9634255 (GRCh38)
7:9673885 (GRCh37)
Canonical SPDI:: NC_000007.14:9634254:TA:
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000063/7 (GnomAD)
-=0.000425/7 (TOMMO)
HGVS:: NC_000007.14:g.9634255_9634256del, NC_000007.13:g.9673885_9673886del

Select item 14913365522.

rs1491336552 has merged into rs60893428 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 7:9634266 (GRCh38)
7:9673896 (GRCh37)
Canonical SPDI:: NC_000007.14:9634255:AAAAAAAAAAAAAA:AAAAAAAAAA,NC_000007.14:9634255:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000007.14:9634255:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000007.14:9634255:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000007.14:9634255:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000007.14:9634255:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.287755/76166 (TOPMED)
-=0.302516/1515 (1000Genomes)
-=0.35/14 (GENOME_DK)
HGVS:: NC_000007.14:g.9634266_9634269del, NC_000007.14:g.9634267_9634269del, NC_000007.14:g.9634268_9634269del, NC_000007.14:g.9634269del, NC_000007.14:g.9634269dup, NC_000007.14:g.9634268_9634269dup, NC_000007.13:g.9673896_9673899del, NC_000007.13:g.9673897_9673899del, NC_000007.13:g.9673898_9673899del, NC_000007.13:g.9673899del, NC_000007.13:g.9673899dup, NC_000007.13:g.9673898_9673899dup

Select item 14899488753.

rs1489948875 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:9632629 (GRCh38)
7:9672259 (GRCh37)
Canonical SPDI:: NC_000007.14:9632628:T:A
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.9632629T>A, NC_000007.13:g.9672259T>A

Select item 14870780484.

rs1487078048 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 7:9635495 (GRCh38)
7:9675126 (GRCh37)
Canonical SPDI:: NC_000007.14:9635495::G
Gene:: PER3P1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00106/148 (GnomAD)
G=0.001093/7 (1000Genomes)
HGVS:: NC_000007.14:g.9635495_9635496insG, NC_000007.13:g.9675125_9675126insG, NR_002790.3:n.1226_1227insG, NR_002790.2:n.1226_1227insG

Select item 14869459215.

rs1486945921 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:9636083 (GRCh38)
7:9675713 (GRCh37)
Canonical SPDI:: NC_000007.14:9636082:T:C,NC_000007.14:9636082:T:G
Gene:: PER3P1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.9636083T>C, NC_000007.14:g.9636083T>G, NC_000007.13:g.9675713T>C, NC_000007.13:g.9675713T>G

Select item 14862450536.

rs1486245053 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:9635012 (GRCh38)
7:9674642 (GRCh37)
Canonical SPDI:: NC_000007.14:9635011:C:T
Gene:: PER3P1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.9635012C>T, NC_000007.13:g.9674642C>T, NR_002790.3:n.743C>T, NR_002790.2:n.743C>T

Select item 14860073757.

rs1486007375 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:9635763 (GRCh38)
7:9675393 (GRCh37)
Canonical SPDI:: NC_000007.14:9635762:T:C
Gene:: PER3P1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.9635763T>C, NC_000007.13:g.9675393T>C, NR_002790.3:n.1494T>C, NR_002790.2:n.1494T>C

Select item 14850133928.

rs1485013392 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 7:9632902 (GRCh38)
7:9672533 (GRCh37)
Canonical SPDI:: NC_000007.14:9632902:A:AA
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.9632903dup, NC_000007.13:g.9672533dup

Select item 14846170409.

rs1484617040 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:9635492 (GRCh38)
7:9675122 (GRCh37)
Canonical SPDI:: NC_000007.14:9635491:C:T
Gene:: PER3P1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.9635492C>T, NC_000007.13:g.9675122C>T, NR_002790.3:n.1223C>T, NR_002790.2:n.1223C>T

Select item 148291594110.

rs1482915941 [Homo sapiens]

Variant type:: DEL
Alleles:: TGT>- [Show Flanks]
Chromosome:: 7:9633267 (GRCh38)
7:9672897 (GRCh37)
Canonical SPDI:: NC_000007.14:9633266:TGT:
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.000021/3 (GnomAD)
-=0.005556/93 (TOMMO)
-=0.01583/29 (Korea1K)
HGVS:: NC_000007.14:g.9633267_9633269del, NC_000007.13:g.9672897_9672899del

Select item 148187001411.

rs1481870014 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:9633285 (GRCh38)
7:9672915 (GRCh37)
Canonical SPDI:: NC_000007.14:9633284:T:G
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00787/23 (KOREAN)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000007.14:g.9633285T>G, NC_000007.13:g.9672915T>G

Select item 148176960912.

rs1481769609 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:9633005 (GRCh38)
7:9672635 (GRCh37)
Canonical SPDI:: NC_000007.14:9633004:C:G,NC_000007.14:9633004:C:T
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.9633005C>G, NC_000007.14:g.9633005C>T, NC_000007.13:g.9672635C>G, NC_000007.13:g.9672635C>T

Select item 147960848213.

rs1479608482 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:9632607 (GRCh38)
7:9672237 (GRCh37)
Canonical SPDI:: NC_000007.14:9632606:G:T
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.9632607G>T, NC_000007.13:g.9672237G>T

Select item 147923421814.

rs1479234218 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:9632727 (GRCh38)
7:9672357 (GRCh37)
Canonical SPDI:: NC_000007.14:9632726:C:T
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.9632727C>T, NC_000007.13:g.9672357C>T

Select item 147910608215.

rs1479106082 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:9634261 (GRCh38)
7:9673891 (GRCh37)
Canonical SPDI:: NC_000007.14:9634260:A:G
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000049/13 (TOPMED)
HGVS:: NC_000007.14:g.9634261A>G, NC_000007.13:g.9673891A>G

Select item 147871599016.

rs1478715990 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:9635507 (GRCh38)
7:9675137 (GRCh37)
Canonical SPDI:: NC_000007.14:9635506:C:G
Gene:: PER3P1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.9635507C>G, NC_000007.13:g.9675137C>G, NR_002790.3:n.1238C>G, NR_002790.2:n.1238C>G

Select item 147812307717.

rs1478123077 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:9633845 (GRCh38)
7:9673475 (GRCh37)
Canonical SPDI:: NC_000007.14:9633844:A:G
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000007.14:g.9633845A>G, NC_000007.13:g.9673475A>G

Select item 147732929618.

rs1477329296 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 7:9633453 (GRCh38)
7:9673083 (GRCh37)
Canonical SPDI:: NC_000007.14:9633452:A:G,NC_000007.14:9633452:A:T
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.9633453A>G, NC_000007.14:g.9633453A>T, NC_000007.13:g.9673083A>G, NC_000007.13:g.9673083A>T

Select item 147584028119.

rs1475840281 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:9635150 (GRCh38)
7:9674780 (GRCh37)
Canonical SPDI:: NC_000007.14:9635149:A:G
Gene:: PER3P1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.9635150A>G, NC_000007.13:g.9674780A>G, NR_002790.3:n.881A>G, NR_002790.2:n.881A>G

Select item 147576004220.

rs1475760042 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:9634197 (GRCh38)
7:9673827 (GRCh37)
Canonical SPDI:: NC_000007.14:9634196:G:C
Gene:: PER3P1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.9634197G>C, NC_000007.13:g.9673827G>C

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