SNP Links for Gene (Select 163742) - SNP

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Links from Gene

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Select item 14884177221.

rs1488417722 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:53441045 (GRCh38)
1:53906718 (GRCh37)
Canonical SPDI:: NC_000001.11:53441044:T:C
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.53441045T>C, NC_000001.10:g.53906718T>C

Select item 14882185472.

rs1488218547 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:53437870 (GRCh38)
1:53903543 (GRCh37)
Canonical SPDI:: NC_000001.11:53437869:C:T
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53437870C>T, NC_000001.10:g.53903543C>T, NM_178501.2:c.*499G>A

Select item 14865801793.

rs1486580179 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:53438392 (GRCh38)
1:53904065 (GRCh37)
Canonical SPDI:: NC_000001.11:53438391:C:T
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.53438392C>T, NC_000001.10:g.53904065C>T, NR_002314.3:n.903G>A, NM_178501.2:c.982G>A, NM_178501.1:c.982G>A

Select item 14862450624.

rs1486245062 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:53438772 (GRCh38)
1:53904445 (GRCh37)
Canonical SPDI:: NC_000001.11:53438771:T:C,NC_000001.11:53438771:T:G
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
C=0.001638/3 (Korea1K)
HGVS:: NC_000001.11:g.53438772T>C, NC_000001.11:g.53438772T>G, NC_000001.10:g.53904445T>C, NC_000001.10:g.53904445T>G, NR_002314.3:n.523A>G, NR_002314.3:n.523A>C, NM_178501.2:c.602A>G, NM_178501.2:c.602A>C, NM_178501.1:c.602A>G, NM_178501.1:c.602A>C

Select item 14861370395.

rs1486137039 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:53439554 (GRCh38)
1:53905227 (GRCh37)
Canonical SPDI:: NC_000001.11:53439553:G:A,NC_000001.11:53439553:G:C
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000054/1 (ALFA)
C=0.000029/4 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000001.11:g.53439554G>A, NC_000001.11:g.53439554G>C, NC_000001.10:g.53905227G>A, NC_000001.10:g.53905227G>C, NM_178501.2:c.-181C>T, NM_178501.2:c.-181C>G

Select item 14860581786.

rs1486058178 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:53439280 (GRCh38)
1:53904953 (GRCh37)
Canonical SPDI:: NC_000001.11:53439279:C:T
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
T=0.000425/7 (TOMMO)
T=0.000685/2 (KOREAN)
HGVS:: NC_000001.11:g.53439280C>T, NC_000001.10:g.53904953C>T, NM_178501.2:c.94G>A, NM_178501.1:c.94G>A

Select item 14860358417.

rs1486035841 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 1:53441955 (GRCh38)
1:53907629 (GRCh37)
Canonical SPDI:: NC_000001.11:53441955::G
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000034/9 (TOPMED)
G=0.00005/7 (GnomAD)
HGVS:: NC_000001.11:g.53441955_53441956insG, NC_000001.10:g.53907628_53907629insG

Select item 14846887728.

rs1484688772 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:53439708 (GRCh38)
1:53905381 (GRCh37)
Canonical SPDI:: NC_000001.11:53439707:T:C
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.53439708T>C, NC_000001.10:g.53905381T>C, XR_947371.2:n.73T>C

Select item 14845021789.

rs1484502178 has merged into rs967633579 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 1:53440455 (GRCh38)
1:53906128 (GRCh37)
Canonical SPDI:: NC_000001.11:53440454:TTTTTTTT:TTTTTTT,NC_000001.11:53440454:TTTTTTTT:TTTTTTTTT
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000001.11:g.53440462del, NC_000001.11:g.53440462dup, NC_000001.10:g.53906135del, NC_000001.10:g.53906135dup

Select item 148446904010.

rs1484469040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:53438606 (GRCh38)
1:53904279 (GRCh37)
Canonical SPDI:: NC_000001.11:53438605:G:A
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53438606G>A, NC_000001.10:g.53904279G>A, NR_002314.3:n.689C>T, NM_178501.2:c.768C>T, NM_178501.1:c.768C>T

Select item 148435857111.

rs1484358571 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:53440180 (GRCh38)
1:53905853 (GRCh37)
Canonical SPDI:: NC_000001.11:53440179:C:T
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53440180C>T, NC_000001.10:g.53905853C>T

Select item 148260062912.

rs1482600629 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:53440530 (GRCh38)
1:53906203 (GRCh37)
Canonical SPDI:: NC_000001.11:53440529:C:A
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53440530C>A, NC_000001.10:g.53906203C>A

Select item 148119497513.

rs1481194975 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:53440193 (GRCh38)
1:53905866 (GRCh37)
Canonical SPDI:: NC_000001.11:53440192:G:C
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53440193G>C, NC_000001.10:g.53905866G>C

Select item 148072420914.

rs1480724209 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:53441767 (GRCh38)
1:53907440 (GRCh37)
Canonical SPDI:: NC_000001.11:53441766:G:T
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.53441767G>T, NC_000001.10:g.53907440G>T

Select item 147609587715.

rs1476095877 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:53441730 (GRCh38)
1:53907403 (GRCh37)
Canonical SPDI:: NC_000001.11:53441729:G:A
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53441730G>A, NC_000001.10:g.53907403G>A

Select item 147571992116.

rs1475719921 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:53440764 (GRCh38)
1:53906437 (GRCh37)
Canonical SPDI:: NC_000001.11:53440763:C:G
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.53440764C>G, NC_000001.10:g.53906437C>G

Select item 147558307117.

rs1475583071 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:53441811 (GRCh38)
1:53907484 (GRCh37)
Canonical SPDI:: NC_000001.11:53441810:C:G,NC_000001.11:53441810:C:T
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53441811C>G, NC_000001.11:g.53441811C>T, NC_000001.10:g.53907484C>G, NC_000001.10:g.53907484C>T

Select item 147553959018.

rs1475539590 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:53439493 (GRCh38)
1:53905166 (GRCh37)
Canonical SPDI:: NC_000001.11:53439492:A:G
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53439493A>G, NC_000001.10:g.53905166A>G, NM_178501.2:c.-120T>C

Select item 147534054919.

rs1475340549 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:53438921 (GRCh38)
1:53904594 (GRCh37)
Canonical SPDI:: NC_000001.11:53438920:G:A
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.53438921G>A, NC_000001.10:g.53904594G>A, NR_002314.3:n.374C>T, NM_178501.2:c.453C>T, NM_178501.1:c.453C>T

Select item 147395336120.

rs1473953361 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:53439201 (GRCh38)
1:53904874 (GRCh37)
Canonical SPDI:: NC_000001.11:53439200:T:C
Gene:: SLC25A3P1 (Varview), LOC105378733 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.53439201T>C, NC_000001.10:g.53904874T>C, NM_178501.2:c.173A>G, NM_178501.1:c.173A>G

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