SNP Links for Gene (Select 159013) - SNP

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:40631664 (GRCh38)
X:40490916 (GRCh37)
Canonical SPDI:: NC_000023.11:40631663:T:A
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.40631664T>A, NC_000023.10:g.40490916T>A, NG_016376.1:g.20904A>T

Select item 14906943317.

rs1490694331 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:40631010 (GRCh38)
X:40490262 (GRCh37)
Canonical SPDI:: NC_000023.11:40631009:G:C
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.40631010G>C, NC_000023.10:g.40490262G>C, NG_016376.1:g.21558C>G

Select item 14906322788.

rs1490632278 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:40642041 (GRCh38)
X:40501293 (GRCh37)
Canonical SPDI:: NC_000023.11:40642040:T:G
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.40642041T>G, NC_000023.10:g.40501293T>G, NG_016376.1:g.10527A>C

Select item 14904182979.

rs1490418297 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:40640961 (GRCh38)
X:40500213 (GRCh37)
Canonical SPDI:: NC_000023.11:40640960:T:A
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0018/8 (ALFA)
A=0.00032/7 (TOMMO)
A=0.02852/83 (KOREAN)
HGVS:: NC_000023.11:g.40640961T>A, NC_000023.10:g.40500213T>A, NG_016376.1:g.11607A>T

Select item 149020277410.

rs1490202774 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:40630260 (GRCh38)
X:40489512 (GRCh37)
Canonical SPDI:: NC_000023.11:40630259:G:A
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.40630260G>A, NC_000023.10:g.40489512G>A, NG_016376.1:g.22308C>T

Select item 149002895711.

rs1490028957 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:40642769 (GRCh38)
X:40502021 (GRCh37)
Canonical SPDI:: NC_000023.11:40642768:A:T
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
T=0.000011/3 (TOPMED)
T=0.00018/2 (TOMMO)
HGVS:: NC_000023.11:g.40642769A>T, NC_000023.10:g.40502021A>T, NG_016376.1:g.9799T>A

Select item 148992627512.

rs1489926275 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: X:40642779 (GRCh38)
X:40502032 (GRCh37)
Canonical SPDI:: NC_000023.11:40642779:TTTTTTTT:TTTTTTTTT
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0.000142/2 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.40642787dup, NC_000023.10:g.40502039dup, NG_016376.1:g.9788dup

Select item 148934174513.

rs1489341745 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:40628031 (GRCh38)
X:40487283 (GRCh37)
Canonical SPDI:: NC_000023.11:40628030:T:C
Gene:: CXorf38 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.40628031T>C, NC_000023.10:g.40487283T>C, NG_016376.1:g.24537A>G, NM_144970.3:c.*2133A>G, NM_144970.2:c.*2133A>G, NM_001330455.2:c.*547A>G, NM_001330455.1:c.*547A>G, XM_006724527.5:c.*2133A>G, XM_006724527.4:c.*2133A>G, XM_006724527.3:c.*2133A>G, XM_005272589.4:c.*547A>G, XM_005272589.3:c.*547A>G, XM_005272589.2:c.*547A>G, XM_005272589.1:c.*547A>G, XM_006724528.3:c.*2133A>G, XM_006724528.2:c.*2133A>G, XM_017029302.2:c.*2133A>G, XM_017029302.1:c.*2133A>G, XM_017029303.2:c.*547A>G, XM_017029303.1:c.*547A>G, XM_047441872.1:c.*2133A>G, XM_047441871.1:c.*2133A>G

Select item 148928396914.

rs1489283969 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:40642085 (GRCh38)
X:40501337 (GRCh37)
Canonical SPDI:: NC_000023.11:40642084:G:C
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.40642085G>C, NC_000023.10:g.40501337G>C, NG_016376.1:g.10483C>G

Select item 148927038415.

rs1489270384 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:40632763 (GRCh38)
X:40492015 (GRCh37)
Canonical SPDI:: NC_000023.11:40632762:C:T
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.40632763C>T, NC_000023.10:g.40492015C>T, NG_016376.1:g.19805G>A

Select item 148911956816.

rs1489119568 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:40628358 (GRCh38)
X:40487610 (GRCh37)
Canonical SPDI:: NC_000023.11:40628357:T:C
Gene:: CXorf38 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.40628358T>C, NC_000023.10:g.40487610T>C, NG_016376.1:g.24210A>G, NM_144970.3:c.*1806A>G, NM_144970.2:c.*1806A>G, NM_001330455.2:c.*220A>G, NM_001330455.1:c.*220A>G, XM_006724527.5:c.*1806A>G, XM_006724527.4:c.*1806A>G, XM_006724527.3:c.*1806A>G, XM_005272589.4:c.*220A>G, XM_005272589.3:c.*220A>G, XM_005272589.2:c.*220A>G, XM_005272589.1:c.*220A>G, XM_006724528.3:c.*1806A>G, XM_006724528.2:c.*1806A>G, XM_017029302.2:c.*1806A>G, XM_017029302.1:c.*1806A>G, XM_017029303.2:c.*220A>G, XM_017029303.1:c.*220A>G, XM_047441872.1:c.*1806A>G, XM_047441871.1:c.*1806A>G

Select item 148888878317.

rs1488888783 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:40627498 (GRCh38)
X:40486750 (GRCh37)
Canonical SPDI:: NC_000023.11:40627497:A:G
Gene:: CXorf38 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.40627498A>G, NC_000023.10:g.40486750A>G, NG_016376.1:g.25070T>C, NM_144970.3:c.*2666T>C, NM_144970.2:c.*2666T>C, NM_001330455.2:c.*1080T>C, NM_001330455.1:c.*1080T>C, XM_006724527.5:c.*2666T>C, XM_006724527.4:c.*2666T>C, XM_006724527.3:c.*2666T>C, XM_005272589.4:c.*1080T>C, XM_005272589.3:c.*1080T>C, XM_005272589.2:c.*1080T>C, XM_005272589.1:c.*1080T>C, XM_006724528.3:c.*2666T>C, XM_006724528.2:c.*2666T>C, XM_017029302.2:c.*2666T>C, XM_017029302.1:c.*2666T>C, XM_017029303.2:c.*1080T>C, XM_017029303.1:c.*1080T>C, XM_047441872.1:c.*2666T>C, XM_047441871.1:c.*2666T>C

Select item 148885333318.

rs1488853333 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:40644605 (GRCh38)
X:40503857 (GRCh37)
Canonical SPDI:: NC_000023.11:40644604:G:C
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.40644605G>C, NC_000023.10:g.40503857G>C, NG_016376.1:g.7963C>G, NG_081212.1:g.469G>C

Select item 148885134719.

rs1488851347 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:40646193 (GRCh38)
X:40505445 (GRCh37)
Canonical SPDI:: NC_000023.11:40646192:G:A,NC_000023.11:40646192:G:T
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0938/231 (ALFA)
G=0.0649/72 (KOREAN)
G=0.0957/9 (SGDP_PRJ)
HGVS:: NC_000023.11:g.40646193G>A, NC_000023.11:g.40646193G>T, NC_000023.10:g.40505445G>A, NC_000023.10:g.40505445G>T, NG_016376.1:g.6375C>T, NG_016376.1:g.6375C>A

Select item 148871593620.

rs1488715936 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:40633394 (GRCh38)
X:40492646 (GRCh37)
Canonical SPDI:: NC_000023.11:40633393:C:T
Gene:: CXorf38 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.40633394C>T, NC_000023.10:g.40492646C>T, NG_016376.1:g.19174G>A

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