SNP Links for Gene (Select 158314) - SNP

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Select item 14915558721.

rs1491555872 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 9:92151448 (GRCh38)
9:94913730 (GRCh37)
Canonical SPDI:: NC_000009.12:92151447:CA:
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000009.12:g.92151448_92151449del, NC_000009.11:g.94913730_94913731del

Select item 14914821512.

rs1491482151 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 9:92152908 (GRCh38)
9:94915190 (GRCh37)
Canonical SPDI:: NC_000009.12:92152906:TCT:T
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.92152908_92152909del, NC_000009.11:g.94915190_94915191del

Select item 14914680473.

rs1491468047 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 9:92146164 (GRCh38)
9:94908447 (GRCh37)
Canonical SPDI:: NC_000009.12:92146164:G:GG
Gene:: LINC00475 (Varview), LOC124902345 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
G=0.000402/46 (GnomAD)
HGVS:: NC_000009.12:g.92146165dup, NC_000009.11:g.94908447dup

Select item 14914059054.

rs1491405905 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 9:92152907 (GRCh38)
9:94915190 (GRCh37)
Canonical SPDI:: NC_000009.12:92152907:C:CC
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000039/4 (GnomAD)
HGVS:: NC_000009.12:g.92152908dup, NC_000009.11:g.94915190dup

Select item 14913401335.

rs1491340133 has merged into rs34310564 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>-,G,GGG,GGGG [Show Flanks]
Chromosome:: 9:92142158 (GRCh38)
9:94904440 (GRCh37)
Canonical SPDI:: NC_000009.12:92142149:GGGGGGGGGG:GGGGGGGG,NC_000009.12:92142149:GGGGGGGGGG:GGGGGGGGG,NC_000009.12:92142149:GGGGGGGGGG:GGGGGGGGGGG,NC_000009.12:92142149:GGGGGGGGGG:GGGGGGGGGGGG
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGG=0.0001/1 (ALFA)
-=0.21251/788 (TWINSUK)
-=0.22989/886 (ALSPAC)
-=0.35224/1764 (1000Genomes)
HGVS:: NC_000009.12:g.92142158_92142159del, NC_000009.12:g.92142159del, NC_000009.12:g.92142159dup, NC_000009.12:g.92142158_92142159dup, NC_000009.11:g.94904440_94904441del, NC_000009.11:g.94904441del, NC_000009.11:g.94904441dup, NC_000009.11:g.94904440_94904441dup

Select item 14911669946.

rs1491166994 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 9:92146165 (GRCh38)
9:94908447 (GRCh37)
Canonical SPDI:: NC_000009.12:92146163:TGT:T
Gene:: LINC00475 (Varview), LOC124902345 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.00076/9 (ALFA)
HGVS:: NC_000009.12:g.92146165_92146166del, NC_000009.11:g.94908447_94908448del

Select item 14911500547.

rs1491150054 has merged into rs112166069 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 9:92151455 (GRCh38)
9:94913737 (GRCh37)
Canonical SPDI:: NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000009.12:92151448:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAA=0./0 (ALFA)
-=0.12247/472 (ALSPAC)
-=0.12783/474 (TWINSUK)
HGVS:: NC_000009.12:g.92151455_92151464del, NC_000009.12:g.92151456_92151464del, NC_000009.12:g.92151457_92151464del, NC_000009.12:g.92151458_92151464del, NC_000009.12:g.92151459_92151464del, NC_000009.12:g.92151460_92151464del, NC_000009.12:g.92151461_92151464del, NC_000009.12:g.92151462_92151464del, NC_000009.12:g.92151463_92151464del, NC_000009.12:g.92151464del, NC_000009.12:g.92151464dup, NC_000009.12:g.92151463_92151464dup, NC_000009.12:g.92151455_92151464dup, NC_000009.11:g.94913737_94913746del, NC_000009.11:g.94913738_94913746del, NC_000009.11:g.94913739_94913746del, NC_000009.11:g.94913740_94913746del, NC_000009.11:g.94913741_94913746del, NC_000009.11:g.94913742_94913746del, NC_000009.11:g.94913743_94913746del, NC_000009.11:g.94913744_94913746del, NC_000009.11:g.94913745_94913746del, NC_000009.11:g.94913746del, NC_000009.11:g.94913746dup, NC_000009.11:g.94913745_94913746dup, NC_000009.11:g.94913737_94913746dup

Select item 14907216528.

rs1490721652 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:92152806 (GRCh38)
9:94915088 (GRCh37)
Canonical SPDI:: NC_000009.12:92152805:C:A
Gene:: LINC00475 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.92152806C>A, NC_000009.11:g.94915088C>A, NR_027341.1:n.254C>A

Select item 14907052329.

rs1490705232 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>A
Chromosome:: no mapping
Canonical SPDI:

Select item 149063112310.

rs1490631123 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:92145625 (GRCh38)
9:94907907 (GRCh37)
Canonical SPDI:: NC_000009.12:92145624:C:T
Gene:: LINC00475 (Varview), LOC124902345 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000064/9 (GnomAD)
T=0.000068/18 (TOPMED)
HGVS:: NC_000009.12:g.92145625C>T, NC_000009.11:g.94907907C>T

Select item 149060648211.

rs1490606482 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:92146435 (GRCh38)
9:94908717 (GRCh37)
Canonical SPDI:: NC_000009.12:92146434:T:C
Gene:: LINC00475 (Varview), LOC124902345 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.92146435T>C, NC_000009.11:g.94908717T>C

Select item 149036365012.

rs1490363650 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:92153678 (GRCh38)
9:94915960 (GRCh37)
Canonical SPDI:: NC_000009.12:92153677:C:T
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.92153678C>T, NC_000009.11:g.94915960C>T

Select item 149021631413.

rs1490216314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:92149204 (GRCh38)
9:94911486 (GRCh37)
Canonical SPDI:: NC_000009.12:92149203:G:A,NC_000009.12:92149203:G:C
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000043/6 (GnomAD)
HGVS:: NC_000009.12:g.92149204G>A, NC_000009.12:g.92149204G>C, NC_000009.11:g.94911486G>A, NC_000009.11:g.94911486G>C

Select item 149006814414.

rs1490068144 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:92155594 (GRCh38)
9:94917876 (GRCh37)
Canonical SPDI:: NC_000009.12:92155593:C:T
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.92155594C>T, NC_000009.11:g.94917876C>T

Select item 148994017615.

rs1489940176 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:92154044 (GRCh38)
9:94916326 (GRCh37)
Canonical SPDI:: NC_000009.12:92154043:A:G
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.92154044A>G, NC_000009.11:g.94916326A>G

Select item 148988643416.

rs1489886434 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:92139658 (GRCh38)
9:94901940 (GRCh37)
Canonical SPDI:: NC_000009.12:92139657:T:C
Gene:: LINC00475 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.92139658T>C, NC_000009.11:g.94901940T>C

Select item 148965853317.

rs1489658533 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:92148249 (GRCh38)
9:94910531 (GRCh37)
Canonical SPDI:: NC_000009.12:92148248:C:A
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.92148249C>A, NC_000009.11:g.94910531C>A, NG_063179.2:g.1276C>A

Select item 148950586318.

rs1489505863 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:92144590 (GRCh38)
9:94906872 (GRCh37)
Canonical SPDI:: NC_000009.12:92144589:A:G
Gene:: LINC00475 (Varview), LOC124902345 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.92144590A>G, NC_000009.11:g.94906872A>G

Select item 148914143819.

rs1489141438 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:92148781 (GRCh38)
9:94911063 (GRCh37)
Canonical SPDI:: NC_000009.12:92148780:C:T
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.92148781C>T, NC_000009.11:g.94911063C>T

Select item 148906419820.

rs1489064198 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:92147449 (GRCh38)
9:94909731 (GRCh37)
Canonical SPDI:: NC_000009.12:92147448:C:T
Gene:: LINC00475 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.92147449C>T, NC_000009.11:g.94909731C>T, NG_063179.2:g.476C>T, NG_063179.1:g.283C>T

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