SNP Links for Gene (Select 148189) - SNP

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Select item 14905837881.

rs1490583788 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:27793574 (GRCh38)
19:28284482 (GRCh37)
Canonical SPDI:: NC_000019.10:27793573:C:T
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.27793574C>T, NC_000019.9:g.28284482C>T, NR_110688.2:n.144C>T, NR_110688.1:n.108C>T, NR_110689.2:n.144C>T, NR_110689.1:n.108C>T, NR_110691.2:n.144C>T, NR_110691.1:n.108C>T, NR_146734.1:n.144C>T, NR_146733.1:n.144C>T, NR_027301.1:n.367G>A, NR_146735.1:n.144C>T

Select item 14905526842.

rs1490552684 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:27792806 (GRCh38)
19:28283714 (GRCh37)
Canonical SPDI:: NC_000019.10:27792805:T:A
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.27792806T>A, NC_000019.9:g.28283714T>A

Select item 14896740453.

rs1489674045 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 19:27793234 (GRCh38)
19:28284143 (GRCh37)
Canonical SPDI:: NC_000019.10:27793234:A:AA
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.27793235dup, NC_000019.9:g.28284143dup

Select item 14884561634.

rs1488456163 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:27792168 (GRCh38)
19:28283076 (GRCh37)
Canonical SPDI:: NC_000019.10:27792167:A:G
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.27792168A>G, NC_000019.9:g.28283076A>G

Select item 14883253455.

rs1488325345 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 19:27791324 (GRCh38)
19:28282232 (GRCh37)
Canonical SPDI:: NC_000019.10:27791318:ACACACA:ACACA
Gene:: LINC00662 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: ACACA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.27791320CA[2], NC_000019.9:g.28282228CA[2], NR_027301.1:n.1220GT[2]

Select item 14879400696.

rs1487940069 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:27795781 (GRCh38)
19:28286689 (GRCh37)
Canonical SPDI:: NC_000019.10:27795780:G:A
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000019.10:g.27795781G>A, NC_000019.9:g.28286689G>A

Select item 14876574737.

rs1487657473 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:27793872 (GRCh38)
19:28284780 (GRCh37)
Canonical SPDI:: NC_000019.10:27793871:T:C
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.27793872T>C, NC_000019.9:g.28284780T>C, NR_027301.1:n.69A>G

Select item 14872671578.

rs1487267157 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:27794519 (GRCh38)
19:28285427 (GRCh37)
Canonical SPDI:: NC_000019.10:27794518:G:A
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.27794519G>A, NC_000019.9:g.28285427G>A

Select item 14869044729.

rs1486904472 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 19:27793544 (GRCh38)
19:28284452 (GRCh37)
Canonical SPDI:: NC_000019.10:27793543:A:C,NC_000019.10:27793543:A:G
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.27793544A>C, NC_000019.10:g.27793544A>G, NC_000019.9:g.28284452A>C, NC_000019.9:g.28284452A>G, NR_110688.2:n.114A>C, NR_110688.2:n.114A>G, NR_110688.1:n.78A>C, NR_110688.1:n.78A>G, NR_110689.2:n.114A>C, NR_110689.2:n.114A>G, NR_110689.1:n.78A>C, NR_110689.1:n.78A>G, NR_110691.2:n.114A>C, NR_110691.2:n.114A>G, NR_110691.1:n.78A>C, NR_110691.1:n.78A>G, NR_146734.1:n.114A>C, NR_146734.1:n.114A>G, NR_146733.1:n.114A>C, NR_146733.1:n.114A>G, NR_027301.1:n.397T>G, NR_027301.1:n.397T>C, NR_146735.1:n.114A>C, NR_146735.1:n.114A>G

Select item 148688752610.

rs1486887526 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:27792384 (GRCh38)
19:28283292 (GRCh37)
Canonical SPDI:: NC_000019.10:27792383:G:T
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.27792384G>T, NC_000019.9:g.28283292G>T

Select item 148648056411.

rs1486480564 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:27793159 (GRCh38)
19:28284067 (GRCh37)
Canonical SPDI:: NC_000019.10:27793158:G:A
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.27793159G>A, NC_000019.9:g.28284067G>A, NR_027301.1:n.483C>T

Select item 148636643012.

rs1486366430 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:27792123 (GRCh38)
19:28283031 (GRCh37)
Canonical SPDI:: NC_000019.10:27792122:G:A
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.27792123G>A, NC_000019.9:g.28283031G>A

Select item 148633640413.

rs1486336404 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:27794203 (GRCh38)
19:28285111 (GRCh37)
Canonical SPDI:: NC_000019.10:27794202:G:C
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.27794203G>C, NC_000019.9:g.28285111G>C

Select item 148600552014.

rs1486005520 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:27793341 (GRCh38)
19:28284249 (GRCh37)
Canonical SPDI:: NC_000019.10:27793340:G:C
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.27793341G>C, NC_000019.9:g.28284249G>C

Select item 148582483915.

rs1485824839 [Homo sapiens]

Variant type:: DEL
Alleles:: TC>- [Show Flanks]
Chromosome:: 19:27795226 (GRCh38)
19:28286134 (GRCh37)
Canonical SPDI:: NC_000019.10:27795225:TC:
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.27795226_27795227del, NC_000019.9:g.28286134_28286135del

Select item 148549442516.

rs1485494425 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:27795641 (GRCh38)
19:28286549 (GRCh37)
Canonical SPDI:: NC_000019.10:27795640:C:T
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.27795641C>T, NC_000019.9:g.28286549C>T

Select item 148533448317.

rs1485334483 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:27790544 (GRCh38)
19:28281452 (GRCh37)
Canonical SPDI:: NC_000019.10:27790543:A:G
Gene:: LINC00662 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.27790544A>G, NC_000019.9:g.28281452A>G, NR_027301.1:n.2000T>C

Select item 148530148918.

rs1485301489 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:27795338 (GRCh38)
19:28286246 (GRCh37)
Canonical SPDI:: NC_000019.10:27795337:A:T
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.27795338A>T, NC_000019.9:g.28286246A>T

Select item 148454483119.

rs1484544831 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:27793863 (GRCh38)
19:28284771 (GRCh37)
Canonical SPDI:: NC_000019.10:27793862:G:T
Gene:: LINC00662 (Varview), LINC02987 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.27793863G>T, NC_000019.9:g.28284771G>T, NR_027301.1:n.78C>A

Select item 148431320020.

rs1484313200 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:27790204 (GRCh38)
19:28281112 (GRCh37)
Canonical SPDI:: NC_000019.10:27790203:C:T
Gene:: LINC00662 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.27790204C>T, NC_000019.9:g.28281112C>T

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