SNP Links for Gene (Select 147525) - SNP

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Select item 14885219541.

rs1488521954 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:5236258 (GRCh38)
18:5236257 (GRCh37)
Canonical SPDI:: NC_000018.10:5236257:C:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000072/19 (TOPMED)
HGVS:: NC_000018.10:g.5236258C>T, NC_000018.9:g.5236257C>T

Select item 14882564112.

rs1488256411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:5238077 (GRCh38)
18:5238076 (GRCh37)
Canonical SPDI:: NC_000018.10:5238076:C:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000049/13 (TOPMED)
T=0.00005/7 (GnomAD)
HGVS:: NC_000018.10:g.5238077C>T, NC_000018.9:g.5238076C>T

Select item 14877956083.

rs1487795608 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 18:5238376 (GRCh38)
18:5238375 (GRCh37)
Canonical SPDI:: NC_000018.10:5238375:C:A,NC_000018.10:5238375:C:G,NC_000018.10:5238375:C:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000016/2 (GnomAD_exomes)
T=0.000026/7 (TOPMED)
G=0.000239/4 (TOMMO)
HGVS:: NC_000018.10:g.5238376C>A, NC_000018.10:g.5238376C>G, NC_000018.10:g.5238376C>T, NC_000018.9:g.5238375C>A, NC_000018.9:g.5238375C>G, NC_000018.9:g.5238375C>T, NR_015389.1:n.277C>A, NR_015389.1:n.277C>G, NR_015389.1:n.277C>T

Select item 14875749404.

rs1487574940 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 18:5238433 (GRCh38)
18:5238432 (GRCh37)
Canonical SPDI:: NC_000018.10:5238432:G:A,NC_000018.10:5238432:G:C,NC_000018.10:5238432:G:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000018.10:g.5238433G>A, NC_000018.10:g.5238433G>C, NC_000018.10:g.5238433G>T, NC_000018.9:g.5238432G>A, NC_000018.9:g.5238432G>C, NC_000018.9:g.5238432G>T, NR_015389.1:n.334G>A, NR_015389.1:n.334G>C, NR_015389.1:n.334G>T

Select item 14866151435.

rs1486615143 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5238396 (GRCh38)
18:5238395 (GRCh37)
Canonical SPDI:: NC_000018.10:5238395:G:A
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5238396G>A, NC_000018.9:g.5238395G>A, NR_015389.1:n.297G>A

Select item 14862901886.

rs1486290188 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 18:5238642 (GRCh38)
18:5238641 (GRCh37)
Canonical SPDI:: NC_000018.10:5238641:C:A
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.5238642C>A, NC_000018.9:g.5238641C>A, NR_015389.1:n.543C>A

Select item 14861732467.

rs1486173246 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TCGCCGCCACCGGGAT [Show Flanks]
Chromosome:: 18:5238032 (GRCh38)
18:5238032 (GRCh37)
Canonical SPDI:: NC_000018.10:5238032:TCGCCGCCACCGGGAT:TCGCCGCCACCGGGATTCGCCGCCACCGGGAT
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TCGCCGCCACCGGGATTCGCCGCCACCGGGAT=0./0 (ALFA)
TCGCCGCCACCGGGAT=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5238033_5238048dup, NC_000018.9:g.5238032_5238047dup

Select item 14860703148.

rs1486070314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5238584 (GRCh38)
18:5238583 (GRCh37)
Canonical SPDI:: NC_000018.10:5238583:G:A
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.5238584G>A, NC_000018.9:g.5238583G>A, NR_015389.1:n.485G>A

Select item 14842886749.

rs1484288674 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:5239286 (GRCh38)
18:5239285 (GRCh37)
Canonical SPDI:: NC_000018.10:5239285:A:G
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000018.10:g.5239286A>G, NC_000018.9:g.5239285A>G

Select item 148380532610.

rs1483805326 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 18:5237467 (GRCh38)
18:5237466 (GRCh37)
Canonical SPDI:: NC_000018.10:5237466:T:A,NC_000018.10:5237466:T:C
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000018.10:g.5237467T>A, NC_000018.10:g.5237467T>C, NC_000018.9:g.5237466T>A, NC_000018.9:g.5237466T>C, NR_026849.1:n.563A>T, NR_026849.1:n.563A>G, NM_152471.1:c.185A>T, NM_152471.1:c.185A>G

Select item 148187306111.

rs1481873061 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:5238931 (GRCh38)
18:5238930 (GRCh37)
Canonical SPDI:: NC_000018.10:5238930:A:G
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
G=0.000177/3 (TOMMO)
HGVS:: NC_000018.10:g.5238931A>G, NC_000018.9:g.5238930A>G, NR_015389.1:n.832A>G

Select item 148161667412.

rs1481616674 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 18:5238303 (GRCh38)
18:5238302 (GRCh37)
Canonical SPDI:: NC_000018.10:5238302:G:C,NC_000018.10:5238302:G:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.5238303G>C, NC_000018.10:g.5238303G>T, NC_000018.9:g.5238302G>C, NC_000018.9:g.5238302G>T, NR_015389.1:n.204G>C, NR_015389.1:n.204G>T

Select item 148148657413.

rs1481486574 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 18:5238088 (GRCh38)
18:5238087 (GRCh37)
Canonical SPDI:: NC_000018.10:5238087:CC:C
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5238089del, NC_000018.9:g.5238088del

Select item 148138509014.

rs1481385090 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:5239701 (GRCh38)
18:5239700 (GRCh37)
Canonical SPDI:: NC_000018.10:5239700:A:G
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.5239701A>G, NC_000018.9:g.5239700A>G

Select item 147999954515.

rs1479999545 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5236431 (GRCh38)
18:5236430 (GRCh37)
Canonical SPDI:: NC_000018.10:5236430:G:A
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.5236431G>A, NC_000018.9:g.5236430G>A

Select item 147961181816.

rs1479611818 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 18:5236462 (GRCh38)
18:5236461 (GRCh37)
Canonical SPDI:: NC_000018.10:5236461:T:G
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000018.10:g.5236462T>G, NC_000018.9:g.5236461T>G

Select item 147917099517.

rs1479170995 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:5236947 (GRCh38)
18:5236946 (GRCh37)
Canonical SPDI:: NC_000018.10:5236946:G:C
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5236947G>C, NC_000018.9:g.5236946G>C, NR_026849.1:n.1083C>G, NM_152471.1:c.*417C>G

Select item 147892164018.

rs1478921640 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:5236338 (GRCh38)
18:5236337 (GRCh37)
Canonical SPDI:: NC_000018.10:5236337:T:C
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
C=0.000071/1 (TOMMO)
HGVS:: NC_000018.10:g.5236338T>C, NC_000018.9:g.5236337T>C

Select item 147721626019.

rs1477216260 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 18:5238329 (GRCh38)
18:5238328 (GRCh37)
Canonical SPDI:: NC_000018.10:5238328:T:C,NC_000018.10:5238328:T:G
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000007/1 (GnomAD)
G=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000018.10:g.5238329T>C, NC_000018.10:g.5238329T>G, NC_000018.9:g.5238328T>C, NC_000018.9:g.5238328T>G, NR_015389.1:n.230T>C, NR_015389.1:n.230T>G

Select item 147603879020.

rs1476038790 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 18:5238466 (GRCh38)
18:5238465 (GRCh37)
Canonical SPDI:: NC_000018.10:5238465:C:G,NC_000018.10:5238465:C:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000018.10:g.5238466C>G, NC_000018.10:g.5238466C>T, NC_000018.9:g.5238465C>G, NC_000018.9:g.5238465C>T, NR_015389.1:n.367C>G, NR_015389.1:n.367C>T