SNP Links for Gene (Select 144571) - SNP

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Select item 14909529601.

rs1490952960 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 12:9065162 (GRCh38)
12:9217758 (GRCh37)
Canonical SPDI:: NC_000012.12:9065161:C:A,NC_000012.12:9065161:C:G,NC_000012.12:9065161:C:T
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00004/0 (TOMMO)
HGVS:: NC_000012.12:g.9065162C>A, NC_000012.12:g.9065162C>G, NC_000012.12:g.9065162C>T, NC_000012.11:g.9217758C>A, NC_000012.11:g.9217758C>G, NC_000012.11:g.9217758C>T

Select item 14904130082.

rs1490413008 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:9063515 (GRCh38)
12:9216111 (GRCh37)
Canonical SPDI:: NC_000012.12:9063514:A:G
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.9063515A>G, NC_000012.11:g.9216111A>G

Select item 14900929343.

rs1490092934 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:9064548 (GRCh38)
12:9217144 (GRCh37)
Canonical SPDI:: NC_000012.12:9064547:C:G
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.9064548C>G, NC_000012.11:g.9217144C>G, NR_034140.1:n.523G>C, NM_182550.1:c.324G>C, NM_001039381.1:c.324G>C

Select item 14900620944.

rs1490062094 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:9065236 (GRCh38)
12:9217832 (GRCh37)
Canonical SPDI:: NC_000012.12:9065235:A:C
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.9065236A>C, NC_000012.11:g.9217832A>C

Select item 14900249495.

rs1490024949 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:9065375 (GRCh38)
12:9217971 (GRCh37)
Canonical SPDI:: NC_000012.12:9065374:C:G
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.9065375C>G, NC_000012.11:g.9217971C>G

Select item 14887844716.

rs1488784471 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:9065386 (GRCh38)
12:9217982 (GRCh37)
Canonical SPDI:: NC_000012.12:9065385:C:G,NC_000012.12:9065385:C:T
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.9065386C>G, NC_000012.12:g.9065386C>T, NC_000012.11:g.9217982C>G, NC_000012.11:g.9217982C>T

Select item 14886837817.

rs1488683781 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:9065763 (GRCh38)
12:9218359 (GRCh37)
Canonical SPDI:: NC_000012.12:9065762:C:T
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.9065763C>T, NC_000012.11:g.9218359C>T, NG_011717.2:g.55200G>A

Select item 14875412878.

rs1487541287 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:9065035 (GRCh38)
12:9217631 (GRCh37)
Canonical SPDI:: NC_000012.12:9065034:G:A
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.9065035G>A, NC_000012.11:g.9217631G>A, NR_034140.1:n.36C>T, NM_182550.1:c.-164C>T, NM_001039381.1:c.-164C>T

Select item 14868264039.

rs1486826403 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:9064656 (GRCh38)
12:9217252 (GRCh37)
Canonical SPDI:: NC_000012.12:9064655:G:A
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.9064656G>A, NC_000012.11:g.9217252G>A, NR_034140.1:n.415C>T, NM_182550.1:c.216C>T, NM_001039381.1:c.216C>T

Select item 148659730010.

rs1486597300 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:9068431 (GRCh38)
12:9221027 (GRCh37)
Canonical SPDI:: NC_000012.12:9068430:A:G
Gene:: A2M (Varview), KLRG1 (Varview), A2M-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.9068431A>G, NC_000012.11:g.9221027A>G, NG_011717.2:g.52532T>C

Select item 148640441911.

rs1486404419 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 12:9067092 (GRCh38)
12:9219688 (GRCh37)
Canonical SPDI:: NC_000012.12:9067091:A:C,NC_000012.12:9067091:A:T
Gene:: KLRG1 (Varview), A2M-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000012.12:g.9067092A>C, NC_000012.12:g.9067092A>T, NC_000012.11:g.9219688A>C, NC_000012.11:g.9219688A>T, NG_011717.2:g.53871T>G, NG_011717.2:g.53871T>A, NR_137424.1:n.1337A>C, NR_137424.1:n.1337A>T, NR_137425.1:n.1319A>C, NR_137425.1:n.1319A>T, NR_026971.1:n.1224A>C, NR_026971.1:n.1224A>T

Select item 148638932512.

rs1486389325 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:9065373 (GRCh38)
12:9217969 (GRCh37)
Canonical SPDI:: NC_000012.12:9065372:T:C
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00055/1 (Korea1K)
HGVS:: NC_000012.12:g.9065373T>C, NC_000012.11:g.9217969T>C

Select item 148613975513.

rs1486139755 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:9065650 (GRCh38)
12:9218246 (GRCh37)
Canonical SPDI:: NC_000012.12:9065649:G:T
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.9065650G>T, NC_000012.11:g.9218246G>T

Select item 148557661714.

rs1485576617 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 12:9064246 (GRCh38)
12:9216843 (GRCh37)
Canonical SPDI:: NC_000012.12:9064246:TTT:TTTT
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.9064249dup, NC_000012.11:g.9216845dup

Select item 148423422815.

rs1484234228 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 12:9068109 (GRCh38)
12:9220706 (GRCh37)
Canonical SPDI:: NC_000012.12:9068109::C
Gene:: A2M (Varview), KLRG1 (Varview), A2M-AS1 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,coding_sequence_variant,frameshift_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.9068109_9068110insC, NC_000012.11:g.9220705_9220706insC, NG_011717.2:g.52853_52854insG, XM_006719056.4:c.4481_4482insG, XM_006719056.3:c.4481_4482insG, XM_006719056.2:c.4481_4482insG, XM_006719056.1:c.4481_4482insG, XP_006719119.1:p.Thr1495fs

Select item 148411018116.

rs1484110181 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 12:9065670 (GRCh38)
12:9218267 (GRCh37)
Canonical SPDI:: NC_000012.12:9065670:GGG:GGGG
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGG=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.9065673dup, NC_000012.11:g.9218269dup

Select item 148281072517.

rs1482810725 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:9067885 (GRCh38)
12:9220481 (GRCh37)
Canonical SPDI:: NC_000012.12:9067884:A:T
Gene:: A2M (Varview), KLRG1 (Varview), A2M-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000012.12:g.9067885A>T, NC_000012.11:g.9220481A>T, NG_011717.2:g.53078T>A, XM_006719056.4:c.*167T>A, XM_006719056.3:c.*167T>A, XM_006719056.2:c.*167T>A, XM_006719056.1:c.*167T>A, NR_137424.1:n.2130A>T, NR_137425.1:n.2112A>T, NR_026971.1:n.2017A>T

Select item 148161347318.

rs1481613473 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 12:9065132 (GRCh38)
12:9217728 (GRCh37)
Canonical SPDI:: NC_000012.12:9065131:A:C,NC_000012.12:9065131:A:G
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000051/6 (GnomAD)
C=0.000837/14 (TOMMO)
C=0.004372/28 (1000Genomes)
HGVS:: NC_000012.12:g.9065132A>C, NC_000012.12:g.9065132A>G, NC_000012.11:g.9217728A>C, NC_000012.11:g.9217728A>G

Select item 148085106519.

rs1480851065 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCT>- [Show Flanks]
Chromosome:: 12:9068394 (GRCh38)
12:9220990 (GRCh37)
Canonical SPDI:: NC_000012.12:9068391:CTCCT:CT
Gene:: A2M (Varview), KLRG1 (Varview), A2M-AS1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CT=0.000071/1 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000012.12:g.9068394_9068396del, NC_000012.11:g.9220990_9220992del, NG_011717.2:g.52569_52571del

Select item 148034229920.

rs1480342299 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:9064638 (GRCh38)
12:9217234 (GRCh37)
Canonical SPDI:: NC_000012.12:9064637:C:T
Gene:: KLRG1 (Varview), A2M-AS1 (Varview), LINC00612 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.9064638C>T, NC_000012.11:g.9217234C>T, NR_034140.1:n.433G>A, NM_182550.1:c.234G>A, NM_001039381.1:c.234G>A