SNP Links for Gene (Select 1435) - SNP

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Select item 14909789741.

rs1490978974 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:109930151 (GRCh38)
1:110472773 (GRCh37)
Canonical SPDI:: NC_000001.11:109930150:C:A
Gene:: CSF1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.109930151C>A, NC_000001.10:g.110472773C>A, NG_030008.1:g.24541C>A, NM_000757.6:c.*1313C>A, NM_000757.5:c.*1313C>A, NM_172211.4:c.*1313C>A, NM_172211.3:c.*1313C>A, XM_017000369.1:c.*1313C>A

Select item 14909632292.

rs1490963229 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:109908609 (GRCh38)
1:110451231 (GRCh37)
Canonical SPDI:: NC_000001.11:109908608:T:A
Gene:: CSF1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.109908609T>A, NC_000001.10:g.110451231T>A, NG_030008.1:g.2999T>A

Select item 14909534933.

rs1490953493 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:109927840 (GRCh38)
1:110470462 (GRCh37)
Canonical SPDI:: NC_000001.11:109927839:G:A
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.109927840G>A, NC_000001.10:g.110470462G>A, NG_030008.1:g.22230G>A

Select item 14907973174.

rs1490797317 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:109924455 (GRCh38)
1:110467077 (GRCh37)
Canonical SPDI:: NC_000001.11:109924454:C:T
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.109924455C>T, NC_000001.10:g.110467077C>T, NG_030008.1:g.18845C>T

Select item 14904932175.

rs1490493217 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:109931311 (GRCh38)
1:110473933 (GRCh37)
Canonical SPDI:: NC_000001.11:109931310:G:A
Gene:: CSF1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000142/2 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.109931311G>A, NC_000001.10:g.110473933G>A, NG_030008.1:g.25701G>A

Select item 14904671756.

rs1490467175 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:109929057 (GRCh38)
1:110471679 (GRCh37)
Canonical SPDI:: NC_000001.11:109929056:T:A
Gene:: CSF1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000447/2 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000446/2 (Estonian)
HGVS:: NC_000001.11:g.109929057T>A, NC_000001.10:g.110471679T>A, NG_030008.1:g.23447T>A, NM_000757.6:c.*219T>A, NM_000757.5:c.*219T>A, NM_172211.4:c.*219T>A, NM_172211.3:c.*219T>A, XM_017000369.1:c.*219T>A

Select item 14903499237.

rs1490349923 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 1:109915762 (GRCh38)
1:110458384 (GRCh37)
Canonical SPDI:: NC_000001.11:109915761:GGGGG:GGGG
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GGGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.109915766del, NC_000001.10:g.110458388del, NG_030008.1:g.10156del

Select item 14901391548.

rs1490139154 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:109926761 (GRCh38)
1:110469383 (GRCh37)
Canonical SPDI:: NC_000001.11:109926760:A:C,NC_000001.11:109926760:A:G
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.109926761A>C, NC_000001.11:g.109926761A>G, NC_000001.10:g.110469383A>C, NC_000001.10:g.110469383A>G, NG_030008.1:g.21151A>C, NG_030008.1:g.21151A>G

Select item 14898826959.

rs1489882695 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:109911404 (GRCh38)
1:110454026 (GRCh37)
Canonical SPDI:: NC_000001.11:109911403:C:T
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (Korea1K)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.109911404C>T, NC_000001.10:g.110454026C>T, NG_030008.1:g.5794C>T

Select item 148966334610.

rs1489663346 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:109911061 (GRCh38)
1:110453683 (GRCh37)
Canonical SPDI:: NC_000001.11:109911060:C:A
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.109911061C>A, NC_000001.10:g.110453683C>A, NG_030008.1:g.5451C>A, NM_000757.6:c.38C>A, NM_000757.5:c.38C>A, NM_172211.4:c.38C>A, NM_172211.3:c.38C>A, NM_172212.3:c.38C>A, NM_172212.2:c.38C>A, NM_172210.3:c.38C>A, NM_172210.2:c.38C>A, XM_047446752.1:c.38C>A, NP_000748.4:p.Thr13Lys, NP_757350.2:p.Thr13Lys, NP_757351.2:p.Thr13Lys, NP_757349.2:p.Thr13Lys, XP_047302708.1:p.Thr13Lys

Select item 148954875411.

rs1489548754 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:109910587 (GRCh38)
1:110453209 (GRCh37)
Canonical SPDI:: NC_000001.11:109910586:G:T
Gene:: CSF1 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.109910587G>T, NC_000001.10:g.110453209G>T, NG_030008.1:g.4977G>T, XM_017000369.1:c.-130G>T

Select item 148921830012.

rs1489218300 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:109922497 (GRCh38)
1:110465119 (GRCh37)
Canonical SPDI:: NC_000001.11:109922496:G:A
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.109922497G>A, NC_000001.10:g.110465119G>A, NG_030008.1:g.16887G>A

Select item 148900623813.

rs1489006238 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:109917640 (GRCh38)
1:110460262 (GRCh37)
Canonical SPDI:: NC_000001.11:109917639:C:G
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.109917640C>G, NC_000001.10:g.110460262C>G, NG_030008.1:g.12030C>G

Select item 148882145414.

rs1488821454 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:109926901 (GRCh38)
1:110469523 (GRCh37)
Canonical SPDI:: NC_000001.11:109926900:A:C,NC_000001.11:109926900:A:G
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.109926901A>C, NC_000001.11:g.109926901A>G, NC_000001.10:g.110469523A>C, NC_000001.10:g.110469523A>G, NG_030008.1:g.21291A>C, NG_030008.1:g.21291A>G

Select item 148876045715.

rs1488760457 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:109918474 (GRCh38)
1:110461096 (GRCh37)
Canonical SPDI:: NC_000001.11:109918473:G:A,NC_000001.11:109918473:G:T
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000001.11:g.109918474G>A, NC_000001.11:g.109918474G>T, NC_000001.10:g.110461096G>A, NC_000001.10:g.110461096G>T, NG_030008.1:g.12864G>A, NG_030008.1:g.12864G>T

Select item 148865330516.

rs1488653305 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:109916405 (GRCh38)
1:110459027 (GRCh37)
Canonical SPDI:: NC_000001.11:109916404:C:T
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.109916405C>T, NC_000001.10:g.110459027C>T, NG_030008.1:g.10795C>T

Select item 148863894417.

rs1488638944 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:109914640 (GRCh38)
1:110457262 (GRCh37)
Canonical SPDI:: NC_000001.11:109914639:G:A,NC_000001.11:109914639:G:T
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.109914640G>A, NC_000001.11:g.109914640G>T, NC_000001.10:g.110457262G>A, NC_000001.10:g.110457262G>T, NG_030008.1:g.9030G>A, NG_030008.1:g.9030G>T

Select item 148847852918.

rs1488478529 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:109909989 (GRCh38)
1:110452611 (GRCh37)
Canonical SPDI:: NC_000001.11:109909988:C:T
Gene:: CSF1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.109909989C>T, NC_000001.10:g.110452611C>T, NG_030008.1:g.4379C>T

Select item 148842943519.

rs1488429435 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:109910790 (GRCh38)
1:110453412 (GRCh37)
Canonical SPDI:: NC_000001.11:109910789:C:T
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.109910790C>T, NC_000001.10:g.110453412C>T, NG_030008.1:g.5180C>T, NM_000757.5:c.-234C>T, NM_172211.3:c.-234C>T, NM_172212.2:c.-234C>T, NM_172210.2:c.-234C>T

Select item 148828763320.

rs1488287633 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:109924430 (GRCh38)
1:110467052 (GRCh37)
Canonical SPDI:: NC_000001.11:109924429:T:C
Gene:: CSF1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.109924430T>C, NC_000001.10:g.110467052T>C, NG_030008.1:g.18820T>C

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