SNP Links for Gene (Select 140678) - SNP

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Select item 14909869171.

rs1490986917 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAT>- [Show Flanks]
Chromosome:: 20:30403052 (GRCh38)
20:29637728 (GRCh37)
Canonical SPDI:: NC_000020.11:30403048:AATAAAT:AAT
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAT=0./0 (ALFA)
-=0.000076/20 (TOPMED)
-=0.000107/15 (GnomAD)
HGVS:: NC_000020.11:g.30403052_30403055del, NC_000020.10:g.29637728_29637731del, NR_045115.1:n.411_414del

Select item 14909305532.

rs1490930553 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:30403704 (GRCh38)
20:29638380 (GRCh37)
Canonical SPDI:: NC_000020.11:30403703:T:C
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000079/11 (GnomAD)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000020.11:g.30403704T>C, NC_000020.10:g.29638380T>C

Select item 14895357683.

rs1489535768 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:30402546 (GRCh38)
20:29637222 (GRCh37)
Canonical SPDI:: NC_000020.11:30402545:C:T
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.30402546C>T, NC_000020.10:g.29637222C>T

Select item 14880292404.

rs1488029240 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:30405181 (GRCh38)
20:29639857 (GRCh37)
Canonical SPDI:: NC_000020.11:30405180:A:G
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.01335/218 (ALFA)
G=0.001203/125 (GnomAD)
G=0.003292/55 (TOMMO)
G=0.003906/7 (Korea1K)
G=0.007964/51 (1000Genomes)
G=0.040606/118 (KOREAN)
HGVS:: NC_000020.11:g.30405181A>G, NC_000020.10:g.29639857A>G

Select item 14880241205.

rs1488024120 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 20:30405345 (GRCh38)
20:29640021 (GRCh37)
Canonical SPDI:: NC_000020.11:30405344:CC:C
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000008/1 (GnomAD)
HGVS:: NC_000020.11:g.30405346del, NC_000020.10:g.29640022del

Select item 14877374186.

rs1487737418 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 20:30405409 (GRCh38)
20:29640085 (GRCh37)
Canonical SPDI:: NC_000020.11:30405408:G:A,NC_000020.11:30405408:G:C,NC_000020.11:30405408:G:T
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0027/32 (ALFA)
A=0.00028/8 (TOMMO)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000020.11:g.30405409G>A, NC_000020.11:g.30405409G>C, NC_000020.11:g.30405409G>T, NC_000020.10:g.29640085G>A, NC_000020.10:g.29640085G>C, NC_000020.10:g.29640085G>T

Select item 14876841597.

rs1487684159 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:30403093 (GRCh38)
20:29637769 (GRCh37)
Canonical SPDI:: NC_000020.11:30403092:C:A
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.30403093C>A, NC_000020.10:g.29637769C>A, NR_045115.1:n.370G>T

Select item 14874787558.

rs1487478755 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 20:30404929 (GRCh38)
20:29639605 (GRCh37)
Canonical SPDI:: NC_000020.11:30404928:A:C
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00025/3 (ALFA)
C=0.00016/1 (1000Genomes)
C=0.00685/20 (KOREAN)
HGVS:: NC_000020.11:g.30404929A>C, NC_000020.10:g.29639605A>C

Select item 14864942289.

rs1486494228 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 20:30404784 (GRCh38)
20:29639460 (GRCh37)
Canonical SPDI:: NC_000020.11:30404783:C:A,NC_000020.11:30404783:C:T
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000020.11:g.30404784C>A, NC_000020.11:g.30404784C>T, NC_000020.10:g.29639460C>A, NC_000020.10:g.29639460C>T

Select item 148598886910.

rs1485988869 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:30403169 (GRCh38)
20:29637845 (GRCh37)
Canonical SPDI:: NC_000020.11:30403168:G:A
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.30403169G>A, NC_000020.10:g.29637845G>A, NR_045115.1:n.294C>T

Select item 148577341511.

rs1485773415 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:30402611 (GRCh38)
20:29637287 (GRCh37)
Canonical SPDI:: NC_000020.11:30402610:T:C
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.30402611T>C, NC_000020.10:g.29637287T>C

Select item 148551138912.

rs1485511389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 20:30404628 (GRCh38)
20:29639304 (GRCh37)
Canonical SPDI:: NC_000020.11:30404627:C:A,NC_000020.11:30404627:C:T
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000036/5 (GnomAD)
T=0.00006/1 (TOMMO)
HGVS:: NC_000020.11:g.30404628C>A, NC_000020.11:g.30404628C>T, NC_000020.10:g.29639304C>A, NC_000020.10:g.29639304C>T

Select item 148452890613.

rs1484528906 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 20:30404400 (GRCh38)
20:29639076 (GRCh37)
Canonical SPDI:: NC_000020.11:30404399:GG:G
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.00001/1 (GnomAD)
-=0.000072/19 (TOPMED)
HGVS:: NC_000020.11:g.30404401del, NC_000020.10:g.29639077del

Select item 148426934714.

rs1484269347 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 20:30405096 (GRCh38)
20:29639772 (GRCh37)
Canonical SPDI:: NC_000020.11:30405095:C:G,NC_000020.11:30405095:C:T
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000020.11:g.30405096C>G, NC_000020.11:g.30405096C>T, NC_000020.10:g.29639772C>G, NC_000020.10:g.29639772C>T

Select item 148423178015.

rs1484231780 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:30404347 (GRCh38)
20:29639023 (GRCh37)
Canonical SPDI:: NC_000020.11:30404346:G:A
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000020.11:g.30404347G>A, NC_000020.10:g.29639023G>A

Select item 148356533916.

rs1483565339 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCCTCTCTTTCCACGGTCTCCCTCT>- [Show Flanks]
Chromosome:: 20:30404235 (GRCh38)
20:29638911 (GRCh37)
Canonical SPDI:: NC_000020.11:30404219:CCACGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCT:CCACGGTCTCCCTCT
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCACGGTCTCCCTCT=0.000142/2 (ALFA)
-=0.000035/1 (TOMMO)
-=0.000072/8 (GnomAD)
HGVS:: NC_000020.11:g.30404235_30404259del, NC_000020.10:g.29638911_29638935del

Select item 148233813217.

rs1482338132 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 20:30405410 (GRCh38)
20:29640086 (GRCh37)
Canonical SPDI:: NC_000020.11:30405409:G:A,NC_000020.11:30405409:G:T
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.00009/12 (GnomAD)
HGVS:: NC_000020.11:g.30405410G>A, NC_000020.11:g.30405410G>T, NC_000020.10:g.29640086G>A, NC_000020.10:g.29640086G>T

Select item 148170117818.

rs1481701178 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAT>- [Show Flanks]
Chromosome:: 20:30403093 (GRCh38)
20:29637769 (GRCh37)
Canonical SPDI:: NC_000020.11:30403089:CATCAT:CAT
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CATCAT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.30403090CAT[1], NC_000020.10:g.29637766CAT[1], NR_045115.1:n.368ATG[1]

Select item 148148554819.

rs1481485548 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 20:30403149 (GRCh38)
20:29637825 (GRCh37)
Canonical SPDI:: NC_000020.11:30403148:T:A,NC_000020.11:30403148:T:C
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000020.11:g.30403149T>A, NC_000020.11:g.30403149T>C, NC_000020.10:g.29637825T>A, NC_000020.10:g.29637825T>C, NR_045115.1:n.314A>T, NR_045115.1:n.314A>G

Select item 148140033020.

rs1481400330 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:30404649 (GRCh38)
20:29639325 (GRCh37)
Canonical SPDI:: NC_000020.11:30404648:G:A
Gene:: MLLT10P1 (Varview), FRG1BP (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.30404649G>A, NC_000020.10:g.29639325G>A