SNP Links for Gene (Select 139628) - SNP

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Links from Gene

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Select item 14909070501.

rs1490907050 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55626080 (GRCh38)
X:55652513 (GRCh37)
Canonical SPDI:: NC_000023.11:55626079:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.55626080C>T, NC_000023.10:g.55652513C>T, NG_021325.1:g.7681C>T, NM_198451.4:c.*1433C>T, NM_198451.3:c.*1433C>T

Select item 14893425912.

rs1489342591 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55623978 (GRCh38)
X:55650411 (GRCh37)
Canonical SPDI:: NC_000023.11:55623977:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.55623978C>T, NC_000023.10:g.55650411C>T, NG_021325.1:g.5579C>T, NM_198451.4:c.267C>T, NM_198451.3:c.267C>T

Select item 14886614043.

rs1488661404 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:55624861 (GRCh38)
X:55651294 (GRCh37)
Canonical SPDI:: NC_000023.11:55624860:G:A
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.55624861G>A, NC_000023.10:g.55651294G>A, NG_021325.1:g.6462G>A, NM_198451.4:c.*214G>A, NM_198451.3:c.*214G>A

Select item 14880126274.

rs1488012627 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:55626274 (GRCh38)
X:55652707 (GRCh37)
Canonical SPDI:: NC_000023.11:55626273:T:G
Gene:: FOXR2 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.55626274T>G, NC_000023.10:g.55652707T>G, NG_021325.1:g.7875T>G

Select item 14878073465.

rs1487807346 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55622388 (GRCh38)
X:55648821 (GRCh37)
Canonical SPDI:: NC_000023.11:55622387:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.55622388C>T, NC_000023.10:g.55648821C>T, NG_021325.1:g.3989C>T

Select item 14870273766.

rs1487027376 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:55625593 (GRCh38)
X:55652026 (GRCh37)
Canonical SPDI:: NC_000023.11:55625592:A:G
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.55625593A>G, NC_000023.10:g.55652026A>G, NG_021325.1:g.7194A>G, NM_198451.4:c.*946A>G, NM_198451.3:c.*946A>G

Select item 14851658107.

rs1485165810 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:55622761 (GRCh38)
X:55649194 (GRCh37)
Canonical SPDI:: NC_000023.11:55622760:T:C
Gene:: FOXR2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.55622761T>C, NC_000023.10:g.55649194T>C, NG_021325.1:g.4362T>C

Select item 14837494138.

rs1483749413 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55624337 (GRCh38)
X:55650770 (GRCh37)
Canonical SPDI:: NC_000023.11:55624336:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.55624337C>T, NC_000023.10:g.55650770C>T, NG_021325.1:g.5938C>T, NM_198451.4:c.626C>T, NM_198451.3:c.626C>T, NP_940853.1:p.Pro209Leu

Select item 14835178439.

rs1483517843 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55622883 (GRCh38)
X:55649316 (GRCh37)
Canonical SPDI:: NC_000023.11:55622882:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.55622883C>T, NC_000023.10:g.55649316C>T, NG_021325.1:g.4484C>T

Select item 148330954510.

rs1483309545 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55622777 (GRCh38)
X:55649210 (GRCh37)
Canonical SPDI:: NC_000023.11:55622776:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.55622777C>T, NC_000023.10:g.55649210C>T, NG_021325.1:g.4378C>T

Select item 148295340911.

rs1482953409 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:55623161 (GRCh38)
X:55649594 (GRCh37)
Canonical SPDI:: NC_000023.11:55623160:T:C
Gene:: FOXR2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000216/4 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.55623161T>C, NC_000023.10:g.55649594T>C, NG_021325.1:g.4762T>C

Select item 148282321012.

rs1482823210 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:55623822 (GRCh38)
X:55650255 (GRCh37)
Canonical SPDI:: NC_000023.11:55623821:C:G
Gene:: FOXR2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.55623822C>G, NC_000023.10:g.55650255C>G, NG_021325.1:g.5423C>G, NM_198451.4:c.111C>G, NM_198451.3:c.111C>G, NP_940853.1:p.Asp37Glu

Select item 148143810713.

rs1481438107 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55625722 (GRCh38)
X:55652155 (GRCh37)
Canonical SPDI:: NC_000023.11:55625721:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0.000224/1 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.55625722C>T, NC_000023.10:g.55652155C>T, NG_021325.1:g.7323C>T, NM_198451.4:c.*1075C>T, NM_198451.3:c.*1075C>T

Select item 148083935114.

rs1480839351 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:55625396 (GRCh38)
X:55651829 (GRCh37)
Canonical SPDI:: NC_000023.11:55625395:A:G
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.55625396A>G, NC_000023.10:g.55651829A>G, NG_021325.1:g.6997A>G, NM_198451.4:c.*749A>G, NM_198451.3:c.*749A>G

Select item 147913857515.

rs1479138575 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: X:55622167 (GRCh38)
X:55648600 (GRCh37)
Canonical SPDI:: NC_000023.11:55622166:GGG:GG
Gene:: FOXR2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0.000447/2 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.55622169del, NC_000023.10:g.55648602del, NG_021325.1:g.3770del

Select item 147888932716.

rs1478889327 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:55623851 (GRCh38)
X:55650284 (GRCh37)
Canonical SPDI:: NC_000023.11:55623850:C:G
Gene:: FOXR2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.55623851C>G, NC_000023.10:g.55650284C>G, NG_021325.1:g.5452C>G, NM_198451.4:c.140C>G, NM_198451.3:c.140C>G, NP_940853.1:p.Ala47Gly

Select item 147885801217.

rs1478858012 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:55625587 (GRCh38)
X:55652020 (GRCh37)
Canonical SPDI:: NC_000023.11:55625586:T:C
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.55625587T>C, NC_000023.10:g.55652020T>C, NG_021325.1:g.7188T>C, NM_198451.4:c.*940T>C, NM_198451.3:c.*940T>C

Select item 147761617418.

rs1477616174 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:55626434 (GRCh38)
X:55652867 (GRCh37)
Canonical SPDI:: NC_000023.11:55626433:G:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
T=0.000023/6 (TOPMED)
T=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.55626434G>T, NC_000023.10:g.55652867G>T, NG_021325.1:g.8035G>T

Select item 147716841519.

rs1477168415 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:55625391 (GRCh38)
X:55651824 (GRCh37)
Canonical SPDI:: NC_000023.11:55625390:A:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000019/2 (GnomAD)
T=0.000416/2 (1000Genomes)
HGVS:: NC_000023.11:g.55625391A>T, NC_000023.10:g.55651824A>T, NG_021325.1:g.6992A>T, NM_198451.4:c.*744A>T, NM_198451.3:c.*744A>T

Select item 147663328920.

rs1476633289 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:55625696 (GRCh38)
X:55652129 (GRCh37)
Canonical SPDI:: NC_000023.11:55625695:C:T
Gene:: FOXR2 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.55625696C>T, NC_000023.10:g.55652129C>T, NG_021325.1:g.7297C>T, NM_198451.4:c.*1049C>T, NM_198451.3:c.*1049C>T