SNP Links for Gene (Select 139422) - SNP

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Select item 14914446681.

rs1491444668 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: X:27821115 (GRCh38)
X:27839233 (GRCh37)
Canonical SPDI:: NC_000023.11:27821115:GGGGG:GGGGGG
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.27821120dup, NC_000023.10:g.27839237dup, NG_017094.1:g.18137dup

Select item 14912828422.

rs1491282842 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: X:27821115 (GRCh38)
X:27839232 (GRCh37)
Canonical SPDI:: NC_000023.11:27821114:AG:
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000142/2 (ALFA)
-=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.27821115_27821116del, NC_000023.10:g.27839232_27839233del, NG_017094.1:g.18132_18133del

Select item 14909915293.

rs1490991529 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCCAACCCCGCCAGCCCCCCCCAACCCCGCCAGCCCCC>-,TCCAACCCCGCCAGCCCCCCCCAACCCCGCCAGCCCCCTCCAACCCCGCCAGCCCCCCCCAACCCCGCCAGCCCCC [Show Flanks]
Chromosome:: X:27809402 (GRCh38)
X:27827519 (GRCh37)
Canonical SPDI:: NC_000023.11:27809378:CCCCCCCAACCCCGCCAGCCCCCTCCAACCCCGCCAGCCCCCCCCAACCCCGCCAGCCCCC:CCCCCCCAACCCCGCCAGCCCCC,NC_000023.11:27809378:CCCCCCCAACCCCGCCAGCCCCCTCCAACCCCGCCAGCCCCCCCCAACCCCGCCAGCCCCC:CCCCCCCAACCCCGCCAGCCCCCTCCAACCCCGCCAGCCCCCCCCAACCCCGCCAGCCCCCTCCAACCCCGCCAGCCCCCCCCAACCCCGCCAGCCCCC
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCAACCCCGCCAGCCCCC=0.00185/22 (ALFA)
CCCCCCCAACCCCGCCAGCCCCCTCCAACCCCGCCAGC=0.0001/1 (TOMMO)
-=0.00676/138 (GnomAD)
HGVS:: NC_000023.11:g.27809402_27809439del, NC_000023.11:g.27809402_27809439dup, NC_000023.10:g.27827519_27827556del, NC_000023.10:g.27827519_27827556dup, NG_017094.1:g.6419_6456del, NG_017094.1:g.6419_6456dup

Select item 14909855994.

rs1490985599 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:27809685 (GRCh38)
X:27827802 (GRCh37)
Canonical SPDI:: NC_000023.11:27809684:C:T
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
T=0.000036/3 (GnomAD)
T=0.000045/1 (TOMMO)
T=0.016955/49 (KOREAN)
HGVS:: NC_000023.11:g.27809685C>T, NC_000023.10:g.27827802C>T, NG_017094.1:g.6702C>T

Select item 14909605085.

rs1490960508 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:27807819 (GRCh38)
X:27825936 (GRCh37)
Canonical SPDI:: NC_000023.11:27807818:C:A
Gene:: MAGEB10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000009/1 (GnomAD)
HGVS:: NC_000023.11:g.27807819C>A, NC_000023.10:g.27825936C>A, NG_017094.1:g.4836C>A

Select item 14905896386.

rs1490589638 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:27820305 (GRCh38)
X:27838422 (GRCh37)
Canonical SPDI:: NC_000023.11:27820304:C:T
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000023.11:g.27820305C>T, NC_000023.10:g.27838422C>T, NG_017094.1:g.17322C>T

Select item 14901750307.

rs1490175030 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: X:27809482 (GRCh38)
X:27827599 (GRCh37)
Canonical SPDI:: NC_000023.11:27809481:GG:
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00088/3 (TOMMO)
HGVS:: NC_000023.11:g.27809482_27809483del, NC_000023.10:g.27827599_27827600del, NG_017094.1:g.6499_6500del

Select item 14899597298.

rs1489959729 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:27812518 (GRCh38)
X:27830635 (GRCh37)
Canonical SPDI:: NC_000023.11:27812517:G:A,NC_000023.11:27812517:G:T
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000019/2 (GnomAD)
A=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.27812518G>A, NC_000023.11:g.27812518G>T, NC_000023.10:g.27830635G>A, NC_000023.10:g.27830635G>T, NG_017094.1:g.9535G>A, NG_017094.1:g.9535G>T, NG_026811.1:g.735G>A, NG_026811.1:g.735G>T

Select item 14896285869.

rs1489628586 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:27819303 (GRCh38)
X:27837420 (GRCh37)
Canonical SPDI:: NC_000023.11:27819302:T:C
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.27819303T>C, NC_000023.10:g.27837420T>C, NG_017094.1:g.16320T>C

Select item 148912640210.

rs1489126402 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:27823511 (GRCh38)
X:27841628 (GRCh37)
Canonical SPDI:: NC_000023.11:27823510:T:C
Gene:: MAGEB10 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.27823511T>C, NC_000023.10:g.27841628T>C, NG_017094.1:g.20528T>C

Select item 148885655111.

rs1488856551 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:27816935 (GRCh38)
X:27835052 (GRCh37)
Canonical SPDI:: NC_000023.11:27816934:C:T
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.27816935C>T, NC_000023.10:g.27835052C>T, NG_017094.1:g.13952C>T

Select item 148851770912.

rs1488517709 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:27818186 (GRCh38)
X:27836303 (GRCh37)
Canonical SPDI:: NC_000023.11:27818185:C:A
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.27818186C>A, NC_000023.10:g.27836303C>A, NG_017094.1:g.15203C>A

Select item 148834003113.

rs1488340031 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:27816093 (GRCh38)
X:27834210 (GRCh37)
Canonical SPDI:: NC_000023.11:27816092:T:A
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.27816093T>A, NC_000023.10:g.27834210T>A, NG_017094.1:g.13110T>A

Select item 148821541914.

rs1488215419 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:27812000 (GRCh38)
X:27830117 (GRCh37)
Canonical SPDI:: NC_000023.11:27811999:C:A
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.27812000C>A, NC_000023.10:g.27830117C>A, NG_017094.1:g.9017C>A, NG_026811.1:g.217C>A

Select item 148811006715.

rs1488110067 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:27810311 (GRCh38)
X:27828428 (GRCh37)
Canonical SPDI:: NC_000023.11:27810310:A:G
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/2 (GnomAD)
G=0.000038/10 (TOPMED)
G=0.000208/1 (1000Genomes)
G=0.000675/9 (TOMMO)
G=0.002396/7 (KOREAN)
HGVS:: NC_000023.11:g.27810311A>G, NC_000023.10:g.27828428A>G, NG_017094.1:g.7328A>G

Select item 148798403216.

rs1487984032 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:27807721 (GRCh38)
X:27825838 (GRCh37)
Canonical SPDI:: NC_000023.11:27807720:C:T
Gene:: MAGEB10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.27807721C>T, NC_000023.10:g.27825838C>T, NG_017094.1:g.4738C>T

Select item 148785601917.

rs1487856019 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:27822645 (GRCh38)
X:27840762 (GRCh37)
Canonical SPDI:: NC_000023.11:27822644:G:A
Gene:: MAGEB10 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
A=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.27822645G>A, NC_000023.10:g.27840762G>A, NG_017094.1:g.19662G>A, NM_182506.3:c.*295G>A

Select item 148785271118.

rs1487852711 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:27806601 (GRCh38)
X:27824718 (GRCh37)
Canonical SPDI:: NC_000023.11:27806600:T:C
Gene:: MAGEB10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.27806601T>C, NC_000023.10:g.27824718T>C, NG_017094.1:g.3618T>C

Select item 148718488419.

rs1487184884 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:27817750 (GRCh38)
X:27835867 (GRCh37)
Canonical SPDI:: NC_000023.11:27817749:T:C
Gene:: MAGEB10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000208/1 (1000Genomes)
HGVS:: NC_000023.11:g.27817750T>C, NC_000023.10:g.27835867T>C, NG_017094.1:g.14767T>C

Select item 148702180720.

rs1487021807 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:27823444 (GRCh38)
X:27841561 (GRCh37)
Canonical SPDI:: NC_000023.11:27823443:T:C
Gene:: MAGEB10 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.27823444T>C, NC_000023.10:g.27841561T>C, NG_017094.1:g.20461T>C

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