Links from Gene
Items: 1 to 20 of 2059
1.
rs1491561652 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CT>-
[Show Flanks]
- Chromosome:
- 9:136759383
(GRCh38)
9:139653835
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759382:CT:
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000079/11
(GnomAD)
- HGVS:
2.
rs1490086962 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- A>-
[Show Flanks]
- Chromosome:
- 9:136757433
(GRCh38)
9:139651885
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136757432:A:
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000011/3
(TOPMED)
- HGVS:
3.
rs1489775927 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C,G
[Show Flanks]
- Chromosome:
- 9:136756117
(GRCh38)
9:139650569
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136756116:T:C,NC_000009.12:136756116:T:G
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.00009/1
(
ALFA)
C=0.00005/5
(GnomAD)
C=0.00048/8
(TOMMO)
C=0.02327/68
(KOREAN)
- HGVS:
4.
rs1489772531 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 9:136757976
(GRCh38)
9:139652428
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136757975:G:A,NC_000009.12:136757975:G:T
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- 5_prime_UTR_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000054/1
(
ALFA)
A=0.000008/2
(TOPMED)
T=0.000223/1
(Estonian)
- HGVS:
5.
rs1489216819 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:136758083
(GRCh38)
9:139652535
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136758082:G:A
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- 5_prime_UTR_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
- HGVS:
6.
rs1488674388 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CAGCTACCAC>-
[Show Flanks]
- Chromosome:
- 9:136759941
(GRCh38)
9:139654393
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759937:CACCAGCTACCAC:CAC
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
CAC=0./0
(
ALFA)
-=0.000023/6
(TOPMED)
- HGVS:
7.
rs1488292536 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136759548
(GRCh38)
9:139654000
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759547:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000071/1
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
8.
rs1488194218 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 9:136757716
(GRCh38)
9:139652168
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136757715:T:C
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
- HGVS:
9.
rs1488160722 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>A,C
[Show Flanks]
- Chromosome:
- 9:136758243
(GRCh38)
9:139652695
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136758242:T:A,NC_000009.12:136758242:T:C
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- 5_prime_UTR_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by cluster
- MAF:
C=0.000007/1
(GnomAD)
A=0.000546/1
(Korea1K)
- HGVS:
10.
rs1488091946 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:136758413
(GRCh38)
9:139652865
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136758412:G:A
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000008/2
(TOPMED)
- HGVS:
11.
rs1487781478 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>A,C
[Show Flanks]
- Chromosome:
- 9:136756175
(GRCh38)
9:139650627
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136756174:T:A,NC_000009.12:136756174:T:C
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.00163/19
(
ALFA)
C=0.00024/4
(TOMMO)
C=0.00402/362
(GnomAD)
C=0.00479/14
(KOREAN)
T=0.5/1
(SGDP_PRJ)
- HGVS:
12.
rs1487454664 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 9:136755108
(GRCh38)
9:139649560
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136755107:C:A,NC_000009.12:136755107:C:T
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- coding_sequence_variant,synonymous_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
13.
rs1487248002 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:136759259
(GRCh38)
9:139653711
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759258:G:A
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000071/1
(
ALFA)
A=0.000015/4
(TOPMED)
A=0.000029/4
(GnomAD)
- HGVS:
14.
rs1486272820 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 9:136759963
(GRCh38)
9:139654415
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759962:C:G,NC_000009.12:136759962:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000071/1
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
15.
rs1486133228 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 9:136759077
(GRCh38)
9:139653529
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759076:A:G
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
16.
rs1485620773 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136759183
(GRCh38)
9:139653635
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759182:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
T=0.000021/2
(GnomAD)
- HGVS:
17.
rs1485618662 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136754219
(GRCh38)
9:139648671
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136754218:C:T
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- 500B_downstream_variant,downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
- HGVS:
18.
rs1485571340 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136759824
(GRCh38)
9:139654276
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759823:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000034/9
(TOPMED)
T=0.000043/6
(GnomAD)
T=0.000156/1
(1000Genomes)
C=0.5/1
(SGDP_PRJ)
- HGVS:
19.
rs1485225969 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- C>-
[Show Flanks]
- Chromosome:
- 9:136756100
(GRCh38)
9:139650552
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136756099:C:
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
-=0.000008/1
(GnomAD)
- HGVS:
20.
rs1484352142 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 9:136754523
(GRCh38)
9:139648975
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136754522:G:A,NC_000009.12:136754522:G:T
- Gene:
- LCN8 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
A=0.000685/2
(KOREAN)
- HGVS: