SNP Links for Gene (Select 134353) - SNP

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Select item 14915681611.

rs1491568161 has merged into rs34644413 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 5:157754702 (GRCh38)
5:157181710 (GRCh37)
Canonical SPDI:: NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:157754692:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
AA=0.473/2369 (1000Genomes)
HGVS:: NC_000005.10:g.157754702_157754713del, NC_000005.10:g.157754708_157754713del, NC_000005.10:g.157754709_157754713del, NC_000005.10:g.157754710_157754713del, NC_000005.10:g.157754711_157754713del, NC_000005.10:g.157754712_157754713del, NC_000005.10:g.157754713del, NC_000005.10:g.157754713dup, NC_000005.10:g.157754712_157754713dup, NC_000005.10:g.157754711_157754713dup, NC_000005.10:g.157754710_157754713dup, NC_000005.10:g.157754709_157754713dup, NC_000005.9:g.157181710_157181721del, NC_000005.9:g.157181716_157181721del, NC_000005.9:g.157181717_157181721del, NC_000005.9:g.157181718_157181721del, NC_000005.9:g.157181719_157181721del, NC_000005.9:g.157181720_157181721del, NC_000005.9:g.157181721del, NC_000005.9:g.157181721dup, NC_000005.9:g.157181720_157181721dup, NC_000005.9:g.157181719_157181721dup, NC_000005.9:g.157181718_157181721dup, NC_000005.9:g.157181717_157181721dup

Select item 14914306552.

rs1491430655 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 5:157754692 (GRCh38)
5:157181700 (GRCh37)
Canonical SPDI:: NC_000005.10:157754691:CA:
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.01104/131 (ALFA)
-=0.00102/45 (GnomAD)
-=0.00149/42 (TOMMO)
HGVS:: NC_000005.10:g.157754692_157754693del, NC_000005.9:g.157181700_157181701del

Select item 14911518143.

rs1491151814 has merged into rs35074350 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTTTTT,TTTTTTTTTTTTT [Show Flanks]
Chromosome:: 5:157753932 (GRCh38)
5:157180940 (GRCh37)
Canonical SPDI:: NC_000005.10:157753922:TTTTTTTTTTT:TTTTTTTTT,NC_000005.10:157753922:TTTTTTTTTTT:TTTTTTTTTT,NC_000005.10:157753922:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000005.10:157753922:TTTTTTTTTTT:TTTTTTTTTTTTT,NC_000005.10:157753922:TTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000005.10:157753922:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.003/7 (1000Genomes)
HGVS:: NC_000005.10:g.157753932_157753933del, NC_000005.10:g.157753933del, NC_000005.10:g.157753933dup, NC_000005.10:g.157753932_157753933dup, NC_000005.10:g.157753928_157753933dup, NC_000005.10:g.157753923_157753933dup, NC_000005.9:g.157180940_157180941del, NC_000005.9:g.157180941del, NC_000005.9:g.157180941dup, NC_000005.9:g.157180940_157180941dup, NC_000005.9:g.157180936_157180941dup, NC_000005.9:g.157180931_157180941dup

Select item 14911357254.

rs1491135725 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 5:157752866 (GRCh38)
5:157179874 (GRCh37)
Canonical SPDI:: NC_000005.10:157752864:AGA:A
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000005.10:g.157752866_157752867del, NC_000005.9:g.157179874_157179875del

Select item 14908345145.

rs1490834514 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:157746635 (GRCh38)
5:157173643 (GRCh37)
Canonical SPDI:: NC_000005.10:157746634:C:T
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000042/11 (TOPMED)
HGVS:: NC_000005.10:g.157746635C>T, NC_000005.9:g.157173643C>T

Select item 14906863236.

rs1490686323 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:157750917 (GRCh38)
5:157177925 (GRCh37)
Canonical SPDI:: NC_000005.10:157750916:G:A
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.157750917G>A, NC_000005.9:g.157177925G>A

Select item 14906154067.

rs1490615406 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:157748211 (GRCh38)
5:157175219 (GRCh37)
Canonical SPDI:: NC_000005.10:157748210:T:C
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.157748211T>C, NC_000005.9:g.157175219T>C

Select item 14905983448.

rs1490598344 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:157756369 (GRCh38)
5:157183377 (GRCh37)
Canonical SPDI:: NC_000005.10:157756368:A:G
Gene:: LSM11 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000045/12 (TOPMED)
G=0.00005/7 (GnomAD)
HGVS:: NC_000005.10:g.157756369A>G, NC_000005.9:g.157183377A>G, NM_173491.4:c.*1105A>G, NM_173491.3:c.*1105A>G, NM_173491.2:c.*1105A>G

Select item 14898677189.

rs1489867718 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:157754158 (GRCh38)
5:157181166 (GRCh37)
Canonical SPDI:: NC_000005.10:157754157:C:T
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.157754158C>T, NC_000005.9:g.157181166C>T

Select item 148943626310.

rs1489436263 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:157758385 (GRCh38)
5:157185393 (GRCh37)
Canonical SPDI:: NC_000005.10:157758384:C:T
Gene:: LSM11 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000005.10:g.157758385C>T, NC_000005.9:g.157185393C>T, NM_173491.4:c.*3121C>T, NM_173491.3:c.*3121C>T

Select item 148928257611.

rs1489282576 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:157752990 (GRCh38)
5:157179998 (GRCh37)
Canonical SPDI:: NC_000005.10:157752989:T:A
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.157752990T>A, NC_000005.9:g.157179998T>A

Select item 148896722712.

rs1488967227 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:157744946 (GRCh38)
5:157171954 (GRCh37)
Canonical SPDI:: NC_000005.10:157744945:G:A
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.157744946G>A, NC_000005.9:g.157171954G>A

Select item 148885422513.

rs1488854225 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 5:157746143 (GRCh38)
5:157173151 (GRCh37)
Canonical SPDI:: NC_000005.10:157746142:T:
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.157746143del, NC_000005.9:g.157173151del

Select item 148879617614.

rs1488796176 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:157744150 (GRCh38)
5:157171158 (GRCh37)
Canonical SPDI:: NC_000005.10:157744149:C:A,NC_000005.10:157744149:C:T
Gene:: LSM11 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.157744150C>A, NC_000005.10:g.157744150C>T, NC_000005.9:g.157171158C>A, NC_000005.9:g.157171158C>T, NM_173491.4:c.400C>A, NM_173491.4:c.400C>T, NM_173491.3:c.400C>A, NM_173491.3:c.400C>T, NM_173491.2:c.400C>A, NM_173491.2:c.400C>T, NP_775762.1:p.Pro134Thr, NP_775762.1:p.Pro134Ser

Select item 148868968315.

rs1488689683 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:157742256 (GRCh38)
5:157169264 (GRCh37)
Canonical SPDI:: NC_000005.10:157742255:C:G,NC_000005.10:157742255:C:T
Gene:: LSM11 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000005.10:g.157742256C>G, NC_000005.10:g.157742256C>T, NC_000005.9:g.157169264C>G, NC_000005.9:g.157169264C>T

Select item 148866723216.

rs1488667232 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:157743605 (GRCh38)
5:157170613 (GRCh37)
Canonical SPDI:: NC_000005.10:157743604:C:T
Gene:: LSM11 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.157743605C>T, NC_000005.9:g.157170613C>T

Select item 148834360917.

rs1488343609 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:157744634 (GRCh38)
5:157171642 (GRCh37)
Canonical SPDI:: NC_000005.10:157744633:G:A
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.157744634G>A, NC_000005.9:g.157171642G>A

Select item 148820200418.

rs1488202004 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 5:157758828 (GRCh38)
5:157185836 (GRCh37)
Canonical SPDI:: NC_000005.10:157758827:A:G,NC_000005.10:157758827:A:T
Gene:: LSM11 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.157758828A>G, NC_000005.10:g.157758828A>T, NC_000005.9:g.157185836A>G, NC_000005.9:g.157185836A>T, NM_173491.4:c.*3564A>G, NM_173491.4:c.*3564A>T, NM_173491.3:c.*3564A>G, NM_173491.3:c.*3564A>T

Select item 148815776819.

rs1488157768 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 5:157744145 (GRCh38)
5:157171153 (GRCh37)
Canonical SPDI:: NC_000005.10:157744144:G:A,NC_000005.10:157744144:G:C
Gene:: LSM11 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.157744145G>A, NC_000005.10:g.157744145G>C, NC_000005.9:g.157171153G>A, NC_000005.9:g.157171153G>C, NM_173491.4:c.395G>A, NM_173491.4:c.395G>C, NM_173491.3:c.395G>A, NM_173491.3:c.395G>C, NM_173491.2:c.395G>A, NM_173491.2:c.395G>C, NP_775762.1:p.Arg132Lys, NP_775762.1:p.Arg132Thr

Select item 148811447920.

rs1488114479 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:157754665 (GRCh38)
5:157181673 (GRCh37)
Canonical SPDI:: NC_000005.10:157754664:C:G
Gene:: LSM11 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.157754665C>G, NC_000005.9:g.157181673C>G

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