SNP Links for Gene (Select 123970) - SNP

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Items: 1 to 20 of 6447

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Select item 14911307091.

rs1491130709 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 16:49375341 (GRCh38)
16:49409252 (GRCh37)
Canonical SPDI:: NC_000016.10:49375339:ATA:A
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.49375341_49375342del, NC_000016.9:g.49409252_49409253del

Select item 14909044922.

rs1490904492 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:49382696 (GRCh38)
16:49416607 (GRCh37)
Canonical SPDI:: NC_000016.10:49382695:T:G
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000546/1 (Korea1K)
HGVS:: NC_000016.10:g.49382696T>G, NC_000016.9:g.49416607T>G

Select item 14907859913.

rs1490785991 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:49388699 (GRCh38)
16:49422610 (GRCh37)
Canonical SPDI:: NC_000016.10:49388698:A:G
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
G=0.000106/2 (TOMMO)
G=0.000342/1 (KOREAN)
HGVS:: NC_000016.10:g.49388699A>G, NC_000016.9:g.49422610A>G

Select item 14907089694.

rs1490708969 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 16:49399796 (GRCh38)
16:49433707 (GRCh37)
Canonical SPDI:: NC_000016.10:49399795:G:A,NC_000016.10:49399795:G:C
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.49399796G>A, NC_000016.10:g.49399796G>C, NC_000016.9:g.49433707G>A, NC_000016.9:g.49433707G>C

Select item 14907038725.

rs1490703872 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:49387398 (GRCh38)
16:49421309 (GRCh37)
Canonical SPDI:: NC_000016.10:49387397:G:A
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.49387398G>A, NC_000016.9:g.49421309G>A

Select item 14906574686.

rs1490657468 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:49395441 (GRCh38)
16:49429352 (GRCh37)
Canonical SPDI:: NC_000016.10:49395440:A:G
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000016.10:g.49395441A>G, NC_000016.9:g.49429352A>G

Select item 14903892167.

rs1490389216 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:49381112 (GRCh38)
16:49415023 (GRCh37)
Canonical SPDI:: NC_000016.10:49381111:G:A
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.49381112G>A, NC_000016.9:g.49415023G>A

Select item 14902548178.

rs1490254817 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 16:49380582 (GRCh38)
16:49414493 (GRCh37)
Canonical SPDI:: NC_000016.10:49380581:C:
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.49380582del, NC_000016.9:g.49414493del

Select item 14902283009.

rs1490228300 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:49381519 (GRCh38)
16:49415430 (GRCh37)
Canonical SPDI:: NC_000016.10:49381518:A:G
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.49381519A>G, NC_000016.9:g.49415430A>G

Select item 149002198210.

rs1490021982 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:49374550 (GRCh38)
16:49408461 (GRCh37)
Canonical SPDI:: NC_000016.10:49374549:C:G
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.49374550C>G, NC_000016.9:g.49408461C>G, XR_001752167.2:n.2193G>C, XR_001752167.1:n.2193G>C

Select item 149001122311.

rs1490011223 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:49389220 (GRCh38)
16:49423131 (GRCh37)
Canonical SPDI:: NC_000016.10:49389219:C:G,NC_000016.10:49389219:C:T
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/4 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.49389220C>G, NC_000016.10:g.49389220C>T, NC_000016.9:g.49423131C>G, NC_000016.9:g.49423131C>T

Select item 148980004312.

rs1489800043 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:49390305 (GRCh38)
16:49424216 (GRCh37)
Canonical SPDI:: NC_000016.10:49390304:G:T
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.49390305G>T, NC_000016.9:g.49424216G>T

Select item 148974810213.

rs1489748102 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 16:49385287 (GRCh38)
16:49419198 (GRCh37)
Canonical SPDI:: NC_000016.10:49385286:AA:A
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000016.10:g.49385288del, NC_000016.9:g.49419199del

Select item 148963125414.

rs1489631254 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:49397857 (GRCh38)
16:49431768 (GRCh37)
Canonical SPDI:: NC_000016.10:49397856:C:T
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.49397857C>T, NC_000016.9:g.49431768C>T

Select item 148939419415.

rs1489394194 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:49390375 (GRCh38)
16:49424286 (GRCh37)
Canonical SPDI:: NC_000016.10:49390374:G:C
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.49390375G>C, NC_000016.9:g.49424286G>C

Select item 148938736816.

rs1489387368 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 16:49382408 (GRCh38)
16:49416319 (GRCh37)
Canonical SPDI:: NC_000016.10:49382407:G:A,NC_000016.10:49382407:G:C
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.49382408G>A, NC_000016.10:g.49382408G>C, NC_000016.9:g.49416319G>A, NC_000016.9:g.49416319G>C

Select item 148913960217.

rs1489139602 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:49386217 (GRCh38)
16:49420128 (GRCh37)
Canonical SPDI:: NC_000016.10:49386216:G:T
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000546/1 (Korea1K)
T=0.000708/12 (TOMMO)
T=0.002396/7 (KOREAN)
HGVS:: NC_000016.10:g.49386217G>T, NC_000016.9:g.49420128G>T

Select item 148896947118.

rs1488969471 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:49373055 (GRCh38)
16:49406966 (GRCh37)
Canonical SPDI:: NC_000016.10:49373054:C:T
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.49373055C>T, NC_000016.9:g.49406966C>T, XR_001752167.2:n.3688G>A

Select item 148881847219.

rs1488818472 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:49390714 (GRCh38)
16:49424625 (GRCh37)
Canonical SPDI:: NC_000016.10:49390713:T:A
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.49390714T>A, NC_000016.9:g.49424625T>A

Select item 148876794920.

rs1488767949 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:49389625 (GRCh38)
16:49423536 (GRCh37)
Canonical SPDI:: NC_000016.10:49389624:C:G
Gene:: C16orf78 (Varview), LOC105371244 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.49389625C>G, NC_000016.9:g.49423536C>G

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