SNP Links for Gene (Select 123207) - SNP

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Select item 14914677011.

rs1491467701 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAT [Show Flanks]
Chromosome:: 15:82997035 (GRCh38)
15:83665788 (GRCh37)
Canonical SPDI:: NC_000015.10:82997035:AT:ATTAT
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: ATTAT=0.00017/2 (ALFA)
HGVS:: NC_000015.10:g.82997037_82997038insTAT, NC_000015.9:g.83665789_83665790insTAT, NM_144597.3:c.*8561_*8562insAAT

Select item 14911877852.

rs1491187785 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 15:82998270 (GRCh38)
15:83667022 (GRCh37)
Canonical SPDI:: NC_000015.10:82998269:AC:
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000015.10:g.82998270_82998271del, NC_000015.9:g.83667022_83667023del, NM_144597.3:c.*7326_*7327del

Select item 14910706083.

rs1491070608 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAT [Show Flanks]
Chromosome:: 15:82997038 (GRCh38)
15:83665791 (GRCh37)
Canonical SPDI:: NC_000015.10:82997038:AT:ATTAT
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: ATTAT=0.00017/2 (ALFA)
HGVS:: NC_000015.10:g.82997040_82997041insTAT, NC_000015.9:g.83665792_83665793insTAT, NM_144597.3:c.*8558_*8559insAAT

Select item 14909141744.

rs1490914174 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:82997731 (GRCh38)
15:83666483 (GRCh37)
Canonical SPDI:: NC_000015.10:82997730:C:T
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.82997731C>T, NC_000015.9:g.83666483C>T, NM_144597.3:c.*7866G>A

Select item 14908725285.

rs1490872528 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:83009719 (GRCh38)
15:83678471 (GRCh37)
Canonical SPDI:: NC_000015.10:83009718:G:A
Gene:: C15orf40 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.83009719G>A, NC_000015.9:g.83678471G>A

Select item 14908525026.

rs1490852502 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:83007465 (GRCh38)
15:83676217 (GRCh37)
Canonical SPDI:: NC_000015.10:83007464:A:G
Gene:: C15orf40 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.83007465A>G, NC_000015.9:g.83676217A>G

Select item 14908247367.

rs1490824736 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:83010659 (GRCh38)
15:83679411 (GRCh37)
Canonical SPDI:: NC_000015.10:83010658:G:T
Gene:: C15orf40 (Varview), LOC124903542 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.83010659G>T, NC_000015.9:g.83679411G>T

Select item 14908186098.

rs1490818609 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:82992876 (GRCh38)
15:83661628 (GRCh37)
Canonical SPDI:: NC_000015.10:82992875:C:G,NC_000015.10:82992875:C:T
Gene:: C15orf40 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.82992876C>G, NC_000015.10:g.82992876C>T, NC_000015.9:g.83661628C>G, NC_000015.9:g.83661628C>T

Select item 14906892219.

rs1490689221 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:82989310 (GRCh38)
15:83658062 (GRCh37)
Canonical SPDI:: NC_000015.10:82989309:A:G
Gene:: RAMAC (Varview), C15orf40 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000342/1 (KOREAN)
HGVS:: NC_000015.10:g.82989310A>G, NC_000015.9:g.83658062A>G, XM_047432137.1:c.*1373T>C

Select item 149065581710.

rs1490655817 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:82991753 (GRCh38)
15:83660505 (GRCh37)
Canonical SPDI:: NC_000015.10:82991752:A:G
Gene:: C15orf40 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.82991753A>G, NC_000015.9:g.83660505A>G

Select item 149062531211.

rs1490625312 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 15:82994298 (GRCh38)
15:83663050 (GRCh37)
Canonical SPDI:: NC_000015.10:82994297:T:A,NC_000015.10:82994297:T:G
Gene:: C15orf40 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
HGVS:: NC_000015.10:g.82994298T>A, NC_000015.10:g.82994298T>G, NC_000015.9:g.83663050T>A, NC_000015.9:g.83663050T>G

Select item 149045152212.

rs1490451522 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:83002580 (GRCh38)
15:83671332 (GRCh37)
Canonical SPDI:: NC_000015.10:83002579:G:C
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.83002580G>C, NC_000015.9:g.83671332G>C, NM_144597.3:c.*3017C>G

Select item 149033408213.

rs1490334082 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 15:82989337 (GRCh38)
15:83658089 (GRCh37)
Canonical SPDI:: NC_000015.10:82989336:A:
Gene:: RAMAC (Varview), C15orf40 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.82989337del, NC_000015.9:g.83658089del, XM_047432137.1:c.*1346del

Select item 149028686714.

rs1490286867 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:83002099 (GRCh38)
15:83670851 (GRCh37)
Canonical SPDI:: NC_000015.10:83002098:G:A
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.83002099G>A, NC_000015.9:g.83670851G>A, NM_144597.3:c.*3498C>T

Select item 149007870415.

rs1490078704 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:83011503 (GRCh38)
15:83680255 (GRCh37)
Canonical SPDI:: NC_000015.10:83011502:C:A,NC_000015.10:83011502:C:T
Gene:: C15orf40 (Varview), LOC124903542 (Varview)
Functional Consequence:: upstream_transcript_variant,coding_sequence_variant,non_coding_transcript_variant,synonymous_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.83011503C>A, NC_000015.10:g.83011503C>T, NC_000015.9:g.83680255C>A, NC_000015.9:g.83680255C>T, NM_144597.3:c.105G>T, NM_144597.3:c.105G>A, NM_144597.2:c.105G>T, NM_144597.2:c.105G>A, XM_011521212.3:c.105G>T, XM_011521212.3:c.105G>A, XM_011521212.2:c.105G>T, XM_011521212.2:c.105G>A, XM_011521212.1:c.105G>T, XM_011521212.1:c.105G>A, XM_006720385.3:c.105G>T, XM_006720385.3:c.105G>A, XM_006720385.2:c.105G>T, XM_006720385.2:c.105G>A, XM_006720385.1:c.105G>T, XM_006720385.1:c.105G>A, XM_011521213.3:c.105G>T, XM_011521213.3:c.105G>A, XM_011521213.2:c.105G>T, XM_011521213.2:c.105G>A, XM_011521213.1:c.105G>T, XM_011521213.1:c.105G>A, XM_011521214.3:c.105G>T, XM_011521214.3:c.105G>A, XM_011521214.2:c.105G>T, XM_011521214.2:c.105G>A, XM_011521214.1:c.105G>T, XM_011521214.1:c.105G>A, NR_027649.2:n.137G>T, NR_027649.2:n.137G>A, NR_027649.1:n.139G>T, NR_027649.1:n.139G>A, NM_001160113.2:c.105G>T, NM_001160113.2:c.105G>A, NM_001160113.1:c.105G>T, NM_001160113.1:c.105G>A, NR_027650.2:n.137G>T, NR_027650.2:n.137G>A, NR_027650.1:n.139G>T, NR_027650.1:n.139G>A, NM_001160114.2:c.105G>T, NM_001160114.2:c.105G>A, NM_001160114.1:c.105G>T, NM_001160114.1:c.105G>A, NM_001160115.2:c.105G>T, NM_001160115.2:c.105G>A, NM_001160115.1:c.105G>T, NM_001160115.1:c.105G>A, NM_001160116.2:c.105G>T, NM_001160116.2:c.105G>A, NM_001160116.1:c.105G>T, NM_001160116.1:c.105G>A, XM_047432137.1:c.105G>T, XM_047432137.1:c.105G>A, XM_047432138.1:c.105G>T, XM_047432138.1:c.105G>A

Select item 149007852816.

rs1490078528 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:82997983 (GRCh38)
15:83666735 (GRCh37)
Canonical SPDI:: NC_000015.10:82997982:C:T
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.005142/61 (ALFA)
T=0.000142/2 (TOMMO)
T=0.003695/477 (GnomAD)
C=0.4375/7 (SGDP_PRJ)
HGVS:: NC_000015.10:g.82997983C>T, NC_000015.9:g.83666735C>T, NM_144597.3:c.*7614G>A

Select item 149005404917.

rs1490054049 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 15:83009209 (GRCh38)
15:83677962 (GRCh37)
Canonical SPDI:: NC_000015.10:83009209:A:AA
Gene:: C15orf40 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.83009210dup, NC_000015.9:g.83677962dup

Select item 148993123618.

rs1489931236 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:83007902 (GRCh38)
15:83676654 (GRCh37)
Canonical SPDI:: NC_000015.10:83007901:T:G
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.83007902T>G, NC_000015.9:g.83676654T>G, NR_027649.2:n.1055A>C, NM_001160113.2:c.*508A>C

Select item 148991594319.

rs1489915943 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:82997295 (GRCh38)
15:83666047 (GRCh37)
Canonical SPDI:: NC_000015.10:82997294:G:T
Gene:: C15orf40 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.82997295G>T, NC_000015.9:g.83666047G>T, NM_144597.3:c.*8302C>A

Select item 148977168520.

rs1489771685 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:83012424 (GRCh38)
15:83681176 (GRCh37)
Canonical SPDI:: NC_000015.10:83012423:G:A
Gene:: C15orf40 (Varview), LOC124903542 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.83012424G>A, NC_000015.9:g.83681176G>A, XR_007064742.1:n.684G>A