SNP Links for Gene (Select 121364) - SNP

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Select item 14914410971.

rs1491441097 has merged into rs112704008 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTGT>-,GT,GTGT,GTGTGTGT,GTGTGTGTGT,GTGTGTGTGTGT [Show Flanks]
Chromosome:: 12:55220526 (GRCh38)
12:55614310 (GRCh37)
Canonical SPDI:: NC_000012.12:55220510:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000012.12:55220510:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGT,NC_000012.12:55220510:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGT,NC_000012.12:55220510:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGT,NC_000012.12:55220510:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGT,NC_000012.12:55220510:TGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGT
Gene:: OR10A7 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGTGTGT=0./0 (ALFA)
TG=0.04667/28 (NorthernSweden)
TG=0.05/2 (GENOME_DK)
TG=0.08427/422 (1000Genomes)
TG=0.09767/21 (Vietnamese)
HGVS:: NC_000012.12:g.55220512GT[7], NC_000012.12:g.55220512GT[8], NC_000012.12:g.55220512GT[9], NC_000012.12:g.55220512GT[11], NC_000012.12:g.55220512GT[12], NC_000012.12:g.55220512GT[13], NC_000012.11:g.55614296GT[7], NC_000012.11:g.55614296GT[8], NC_000012.11:g.55614296GT[9], NC_000012.11:g.55614296GT[11], NC_000012.11:g.55614296GT[12], NC_000012.11:g.55614296GT[13]

Select item 14898669962.

rs1489866996 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 12:55219123 (GRCh38)
12:55612907 (GRCh37)
Canonical SPDI:: NC_000012.12:55219122:G:A,NC_000012.12:55219122:G:T
Gene:: OR10A7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.55219123G>A, NC_000012.12:g.55219123G>T, NC_000012.11:g.55612907G>A, NC_000012.11:g.55612907G>T

Select item 14890559033.

rs1489055903 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:55221480 (GRCh38)
12:55615264 (GRCh37)
Canonical SPDI:: NC_000012.12:55221479:T:C
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.55221480T>C, NC_000012.11:g.55615264T>C, NM_001005280.1:c.456T>C

Select item 14886681174.

rs1488668117 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:55221375 (GRCh38)
12:55615159 (GRCh37)
Canonical SPDI:: NC_000012.12:55221374:G:A
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by cluster
MAF:: A=0.0003/1 (KOREAN)
HGVS:: NC_000012.12:g.55221375G>A, NC_000012.11:g.55615159G>A, NM_001005280.1:c.351G>A, NP_001005280.1:p.Met117Ile

Select item 14871438195.

rs1487143819 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:55220577 (GRCh38)
12:55614361 (GRCh37)
Canonical SPDI:: NC_000012.12:55220576:A:G
Gene:: OR10A7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.55220577A>G, NC_000012.11:g.55614361A>G

Select item 14862555746.

rs1486255574 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 12:55221594 (GRCh38)
12:55615378 (GRCh37)
Canonical SPDI:: NC_000012.12:55221593:G:A,NC_000012.12:55221593:G:C
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.55221594G>A, NC_000012.12:g.55221594G>C, NC_000012.11:g.55615378G>A, NC_000012.11:g.55615378G>C, NM_001005280.1:c.570G>A, NM_001005280.1:c.570G>C

Select item 14844658417.

rs1484465841 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:55220599 (GRCh38)
12:55614383 (GRCh37)
Canonical SPDI:: NC_000012.12:55220598:G:A
Gene:: OR10A7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000012.12:g.55220599G>A, NC_000012.11:g.55614383G>A

Select item 14839832138.

rs1483983213 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:55220610 (GRCh38)
12:55614394 (GRCh37)
Canonical SPDI:: NC_000012.12:55220609:A:T
Gene:: OR10A7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.55220610A>T, NC_000012.11:g.55614394A>T

Select item 14832811929.

rs1483281192 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:55221777 (GRCh38)
12:55615561 (GRCh37)
Canonical SPDI:: NC_000012.12:55221776:C:T
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000051/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000012.12:g.55221777C>T, NC_000012.11:g.55615561C>T, NM_001005280.1:c.753C>T

Select item 148263261510.

rs1482632615 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:55221254 (GRCh38)
12:55615038 (GRCh37)
Canonical SPDI:: NC_000012.12:55221253:T:C
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000012.12:g.55221254T>C, NC_000012.11:g.55615038T>C, NM_001005280.1:c.230T>C, NP_001005280.1:p.Met77Thr

Select item 148256417311.

rs1482564173 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:55219555 (GRCh38)
12:55613339 (GRCh37)
Canonical SPDI:: NC_000012.12:55219554:C:T
Gene:: OR10A7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.55219555C>T, NC_000012.11:g.55613339C>T

Select item 148250776812.

rs1482507768 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:55219571 (GRCh38)
12:55613355 (GRCh37)
Canonical SPDI:: NC_000012.12:55219570:T:C
Gene:: OR10A7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.55219571T>C, NC_000012.11:g.55613355T>C

Select item 148014986113.

rs1480149861 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:55221659 (GRCh38)
12:55615443 (GRCh37)
Canonical SPDI:: NC_000012.12:55221658:G:A
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.55221659G>A, NC_000012.11:g.55615443G>A, NM_001005280.1:c.635G>A, NP_001005280.1:p.Cys212Tyr

Select item 147953824814.

rs1479538248 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:55221465 (GRCh38)
12:55615249 (GRCh37)
Canonical SPDI:: NC_000012.12:55221464:C:T
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.55221465C>T, NC_000012.11:g.55615249C>T, NM_001005280.1:c.441C>T

Select item 147802133815.

rs1478021338 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 12:55222383 (GRCh38)
12:55616167 (GRCh37)
Canonical SPDI:: NC_000012.12:55222382:T:A,NC_000012.12:55222382:T:C
Gene:: OR10A7 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000012.12:g.55222383T>A, NC_000012.12:g.55222383T>C, NC_000012.11:g.55616167T>A, NC_000012.11:g.55616167T>C

Select item 147548703816.

rs1475487038 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:55219229 (GRCh38)
12:55613013 (GRCh37)
Canonical SPDI:: NC_000012.12:55219228:A:G
Gene:: OR10A7 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.55219229A>G, NC_000012.11:g.55613013A>G

Select item 147450380217.

rs1474503802 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:55219660 (GRCh38)
12:55613444 (GRCh37)
Canonical SPDI:: NC_000012.12:55219659:A:G
Gene:: OR10A7 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.55219660A>G, NC_000012.11:g.55613444A>G

Select item 147393324318.

rs1473933243 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:55222239 (GRCh38)
12:55616023 (GRCh37)
Canonical SPDI:: NC_000012.12:55222238:G:A
Gene:: OR10A7 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.55222239G>A, NC_000012.11:g.55616023G>A

Select item 147391092119.

rs1473910921 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 12:55220713 (GRCh38)
12:55614497 (GRCh37)
Canonical SPDI:: NC_000012.12:55220712:T:A,NC_000012.12:55220712:T:C
Gene:: OR10A7 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.55220713T>A, NC_000012.12:g.55220713T>C, NC_000012.11:g.55614497T>A, NC_000012.11:g.55614497T>C

Select item 147378616220.

rs1473786162 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:55221523 (GRCh38)
12:55615307 (GRCh37)
Canonical SPDI:: NC_000012.12:55221522:C:T
Gene:: OR10A7 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
T=0.000022/3 (GnomAD)
HGVS:: NC_000012.12:g.55221523C>T, NC_000012.11:g.55615307C>T, NM_001005280.1:c.499C>T, NP_001005280.1:p.Pro167Ser

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