SNP Links for Gene (Select 119437) - SNP

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Select item 14909767191.

rs1490976719 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:130105179 (GRCh38)
10:131903443 (GRCh37)
Canonical SPDI:: NC_000010.11:130105178:T:C
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.130105179T>C, NC_000010.10:g.131903443T>C

Select item 14905906332.

rs1490590633 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:130107410 (GRCh38)
10:131905674 (GRCh37)
Canonical SPDI:: NC_000010.11:130107409:G:C
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.130107410G>C, NC_000010.10:g.131905674G>C, NR_044994.1:n.1402G>C

Select item 14904800933.

rs1490480093 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:130104087 (GRCh38)
10:131902351 (GRCh37)
Canonical SPDI:: NC_000010.11:130104086:T:C
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.130104087T>C, NC_000010.10:g.131902351T>C, NR_034125.2:n.271A>G, NR_034125.1:n.258A>G

Select item 14896291234.

rs1489629123 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:130106908 (GRCh38)
10:131905172 (GRCh37)
Canonical SPDI:: NC_000010.11:130106907:A:G
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.130106908A>G, NC_000010.10:g.131905172A>G, NR_044994.1:n.900A>G

Select item 14886380815.

rs1488638081 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:130108303 (GRCh38)
10:131906567 (GRCh37)
Canonical SPDI:: NC_000010.11:130108302:C:T
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.130108303C>T, NC_000010.10:g.131906567C>T, NR_044994.1:n.2295C>T

Select item 14883659156.

rs1488365915 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130105469 (GRCh38)
10:131903733 (GRCh37)
Canonical SPDI:: NC_000010.11:130105468:G:A
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.130105469G>A, NC_000010.10:g.131903733G>A

Select item 14876698457.

rs1487669845 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:130105991 (GRCh38)
10:131904255 (GRCh37)
Canonical SPDI:: NC_000010.11:130105990:C:T
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.130105991C>T, NC_000010.10:g.131904255C>T

Select item 14872801898.

rs1487280189 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:130105981 (GRCh38)
10:131904245 (GRCh37)
Canonical SPDI:: NC_000010.11:130105980:G:T
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
T=0.00005/7 (GnomAD)
HGVS:: NC_000010.11:g.130105981G>T, NC_000010.10:g.131904245G>T

Select item 14867566639.

rs1486756663 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130104112 (GRCh38)
10:131902376 (GRCh37)
Canonical SPDI:: NC_000010.11:130104111:G:A
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.130104112G>A, NC_000010.10:g.131902376G>A, NR_034125.2:n.246C>T, NR_034125.1:n.233C>T

Select item 148613042210.

rs1486130422 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:130106028 (GRCh38)
10:131904292 (GRCh37)
Canonical SPDI:: NC_000010.11:130106027:C:T
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000010.11:g.130106028C>T, NC_000010.10:g.131904292C>T, NR_044994.1:n.20C>T

Select item 148559791411.

rs1485597914 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130106123 (GRCh38)
10:131904387 (GRCh37)
Canonical SPDI:: NC_000010.11:130106122:G:A
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.130106123G>A, NC_000010.10:g.131904387G>A, NR_044994.1:n.115G>A

Select item 148546757912.

rs1485467579 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAG>- [Show Flanks]
Chromosome:: 10:130107028 (GRCh38)
10:131905292 (GRCh37)
Canonical SPDI:: NC_000010.11:130107025:AGAAG:AG
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.130107028_130107030del, NC_000010.10:g.131905292_131905294del, NR_044994.1:n.1020_1022del

Select item 148543491413.

rs1485434914 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:130107968 (GRCh38)
10:131906232 (GRCh37)
Canonical SPDI:: NC_000010.11:130107967:T:C
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.130107968T>C, NC_000010.10:g.131906232T>C, NR_044994.1:n.1960T>C

Select item 148537212514.

rs1485372125 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130106429 (GRCh38)
10:131904693 (GRCh37)
Canonical SPDI:: NC_000010.11:130106428:G:A
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.130106429G>A, NC_000010.10:g.131904693G>A, NR_044994.1:n.421G>A

Select item 148519694115.

rs1485196941 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:130107882 (GRCh38)
10:131906146 (GRCh37)
Canonical SPDI:: NC_000010.11:130107881:C:T
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.130107882C>T, NC_000010.10:g.131906146C>T, NR_044994.1:n.1874C>T

Select item 148502501816.

rs1485025018 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:130106378 (GRCh38)
10:131904642 (GRCh37)
Canonical SPDI:: NC_000010.11:130106377:G:A,NC_000010.11:130106377:G:T
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.130106378G>A, NC_000010.11:g.130106378G>T, NC_000010.10:g.131904642G>A, NC_000010.10:g.131904642G>T, NR_044994.1:n.370G>A, NR_044994.1:n.370G>T

Select item 148470111017.

rs1484701110 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:130106060 (GRCh38)
10:131904324 (GRCh37)
Canonical SPDI:: NC_000010.11:130106059:G:A
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000016/3 (GnomAD_exomes)
HGVS:: NC_000010.11:g.130106060G>A, NC_000010.10:g.131904324G>A, NR_044994.1:n.52G>A

Select item 148417346518.

rs1484173465 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:130105487 (GRCh38)
10:131903751 (GRCh37)
Canonical SPDI:: NC_000010.11:130105486:T:C
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.130105487T>C, NC_000010.10:g.131903751T>C

Select item 148354803119.

rs1483548031 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:130108983 (GRCh38)
10:131907247 (GRCh37)
Canonical SPDI:: NC_000010.11:130108982:G:C
Gene:: CTAGE7P (Varview), C10orf143 (Varview), LOC102724883 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000010.11:g.130108983G>C, NC_000010.10:g.131907247G>C

Select item 148190242320.

rs1481902423 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:130107060 (GRCh38)
10:131905324 (GRCh37)
Canonical SPDI:: NC_000010.11:130107059:C:A,NC_000010.11:130107059:C:T
Gene:: CTAGE7P (Varview), C10orf143 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.130107060C>A, NC_000010.11:g.130107060C>T, NC_000010.10:g.131905324C>A, NC_000010.10:g.131905324C>T, NR_044994.1:n.1052C>A, NR_044994.1:n.1052C>T

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