SNP Links for Gene (Select 1132) - SNP

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Select item 14909965191.

rs1490996519 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:46388253 (GRCh38)
11:46409803 (GRCh37)
Canonical SPDI:: NC_000011.10:46388252:G:A
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000094/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000566/9 (TOMMO)
HGVS:: NC_000011.10:g.46388253G>A, NC_000011.9:g.46409803G>A

Select item 14909798092.

rs1490979809 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:46384553 (GRCh38)
11:46406103 (GRCh37)
Canonical SPDI:: NC_000011.10:46384552:G:A
Gene:: CHRM4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.46384553G>A, NC_000011.9:g.46406103G>A, NM_000741.5:c.*565C>T, NM_000741.4:c.*565C>T, NM_001366692.2:c.*565C>T, NM_001366692.1:c.*565C>T

Select item 14909318273.

rs1490931827 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:46385579 (GRCh38)
11:46407129 (GRCh37)
Canonical SPDI:: NC_000011.10:46385578:G:A
Gene:: CHRM4 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.46385579G>A, NC_000011.9:g.46407129G>A, NM_000741.5:c.979C>T, NM_000741.4:c.979C>T, NM_000741.3:c.979C>T, NM_000741.2:c.979C>T, NM_001366692.2:c.979C>T, NM_001366692.1:c.979C>T, NP_000732.2:p.Pro327Ser, NP_001353621.1:p.Pro327Ser

Select item 14891317774.

rs1489131777 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:46387059 (GRCh38)
11:46408609 (GRCh37)
Canonical SPDI:: NC_000011.10:46387058:C:G
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.46387059C>G, NC_000011.9:g.46408609C>G

Select item 14886397045.

rs1488639704 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:46388110 (GRCh38)
11:46409660 (GRCh37)
Canonical SPDI:: NC_000011.10:46388109:G:A
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.46388110G>A, NC_000011.9:g.46409660G>A

Select item 14880454826.

rs1488045482 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:46386139 (GRCh38)
11:46407689 (GRCh37)
Canonical SPDI:: NC_000011.10:46386138:T:A
Gene:: CHRM4 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0.00059/7 (ALFA)
HGVS:: NC_000011.10:g.46386139T>A, NC_000011.9:g.46407689T>A, NM_000741.5:c.419A>T, NM_000741.4:c.419A>T, NM_000741.3:c.419A>T, NM_000741.2:c.419A>T, NM_001366692.2:c.419A>T, NM_001366692.1:c.419A>T, NP_000732.2:p.Tyr140Phe, NP_001353621.1:p.Tyr140Phe

Select item 14879938807.

rs1487993880 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:46387306 (GRCh38)
11:46408856 (GRCh37)
Canonical SPDI:: NC_000011.10:46387305:T:C
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.46387306T>C, NC_000011.9:g.46408856T>C

Select item 14868667968.

rs1486866796 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:46384913 (GRCh38)
11:46406463 (GRCh37)
Canonical SPDI:: NC_000011.10:46384912:A:G
Gene:: CHRM4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.46384913A>G, NC_000011.9:g.46406463A>G, NM_000741.5:c.*205T>C, NM_000741.4:c.*205T>C, NM_000741.3:c.*205T>C, NM_001366692.2:c.*205T>C, NM_001366692.1:c.*205T>C

Select item 14862775889.

rs1486277588 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:46388238 (GRCh38)
11:46409788 (GRCh37)
Canonical SPDI:: NC_000011.10:46388237:G:A
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.46388238G>A, NC_000011.9:g.46409788G>A

Select item 148552937010.

rs1485529370 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:46387515 (GRCh38)
11:46409066 (GRCh37)
Canonical SPDI:: NC_000011.10:46387515:T:TT
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.46387516dup, NC_000011.9:g.46409066dup

Select item 148391355211.

rs1483913552 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:46385862 (GRCh38)
11:46407412 (GRCh37)
Canonical SPDI:: NC_000011.10:46385861:C:T
Gene:: CHRM4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
HGVS:: NC_000011.10:g.46385862C>T, NC_000011.9:g.46407412C>T, NM_000741.5:c.696G>A, NM_000741.4:c.696G>A, NM_000741.3:c.696G>A, NM_000741.2:c.696G>A, NM_001366692.2:c.696G>A, NM_001366692.1:c.696G>A

Select item 148390439812.

rs1483904398 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:46387438 (GRCh38)
11:46408988 (GRCh37)
Canonical SPDI:: NC_000011.10:46387437:G:C
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.46387438G>C, NC_000011.9:g.46408988G>C

Select item 148233851913.

rs1482338519 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:46388500 (GRCh38)
11:46410050 (GRCh37)
Canonical SPDI:: NC_000011.10:46388499:T:A
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.46388500T>A, NC_000011.9:g.46410050T>A

Select item 148191709714.

rs1481917097 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:46385703 (GRCh38)
11:46407253 (GRCh37)
Canonical SPDI:: NC_000011.10:46385702:G:A
Gene:: CHRM4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
HGVS:: NC_000011.10:g.46385703G>A, NC_000011.9:g.46407253G>A, NM_000741.5:c.855C>T, NM_000741.4:c.855C>T, NM_000741.3:c.855C>T, NM_000741.2:c.855C>T, NM_001366692.2:c.855C>T, NM_001366692.1:c.855C>T

Select item 148186857515.

rs1481868575 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:46388189 (GRCh38)
11:46409739 (GRCh37)
Canonical SPDI:: NC_000011.10:46388188:C:T
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.46388189C>T, NC_000011.9:g.46409739C>T

Select item 148093650616.

rs1480936506 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:46385403 (GRCh38)
11:46406953 (GRCh37)
Canonical SPDI:: NC_000011.10:46385402:C:T
Gene:: CHRM4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.46385403C>T, NC_000011.9:g.46406953C>T, NM_000741.5:c.1155G>A, NM_000741.4:c.1155G>A, NM_000741.3:c.1155G>A, NM_000741.2:c.1155G>A, NM_001366692.2:c.1155G>A, NM_001366692.1:c.1155G>A

Select item 148074993317.

rs1480749933 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:46386126 (GRCh38)
11:46407676 (GRCh37)
Canonical SPDI:: NC_000011.10:46386125:G:A
Gene:: CHRM4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.46386126G>A, NC_000011.9:g.46407676G>A, NM_000741.5:c.432C>T, NM_000741.4:c.432C>T, NM_000741.3:c.432C>T, NM_000741.2:c.432C>T, NM_001366692.2:c.432C>T, NM_001366692.1:c.432C>T

Select item 147918712618.

rs1479187126 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:46386840 (GRCh38)
11:46408390 (GRCh37)
Canonical SPDI:: NC_000011.10:46386839:A:C
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.46386840A>C, NC_000011.9:g.46408390A>C

Select item 147879419719.

rs1478794197 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCT>- [Show Flanks]
Chromosome:: 11:46387180 (GRCh38)
11:46408730 (GRCh37)
Canonical SPDI:: NC_000011.10:46387177:CTGCT:CT
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CT=0.000071/1 (ALFA)
-=0.000023/6 (TOPMED)
-=0.00005/7 (GnomAD)
HGVS:: NC_000011.10:g.46387180_46387182del, NC_000011.9:g.46408730_46408732del

Select item 147866080620.

rs1478660806 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:46388104 (GRCh38)
11:46409654 (GRCh37)
Canonical SPDI:: NC_000011.10:46388103:C:T
Gene:: CHRM4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.46388104C>T, NC_000011.9:g.46409654C>T

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