SNP Links for Gene (Select 11313) - SNP

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Select item 14898309951.

rs1489830995 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:23790800 (GRCh38)
1:24117290 (GRCh37)
Canonical SPDI:: NC_000001.11:23790799:G:A
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.23790800G>A, NC_000001.10:g.24117290G>A

Select item 14894063342.

rs1489406334 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:23789734 (GRCh38)
1:24116224 (GRCh37)
Canonical SPDI:: NC_000001.11:23789733:C:A
Gene:: LYPLA2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.23789734C>A, NC_000001.10:g.24116224C>A

Select item 14891373333.

rs1489137333 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:23792234 (GRCh38)
1:24118724 (GRCh37)
Canonical SPDI:: NC_000001.11:23792233:C:T
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.23792234C>T, NC_000001.10:g.24118724C>T

Select item 14883001724.

rs1488300172 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:23793640 (GRCh38)
1:24120130 (GRCh37)
Canonical SPDI:: NC_000001.11:23793639:G:A
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.23793640G>A, NC_000001.10:g.24120130G>A, NG_007068.1:g.12165C>T

Select item 14867562925.

rs1486756292 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 1:23794374 (GRCh38)
1:24120864 (GRCh37)
Canonical SPDI:: NC_000001.11:23794373:G:A,NC_000001.11:23794373:G:C,NC_000001.11:23794373:G:T
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.23794374G>A, NC_000001.11:g.23794374G>C, NC_000001.11:g.23794374G>T, NC_000001.10:g.24120864G>A, NC_000001.10:g.24120864G>C, NC_000001.10:g.24120864G>T, NG_007068.1:g.11431C>T, NG_007068.1:g.11431C>G, NG_007068.1:g.11431C>A

Select item 14859325756.

rs1485932575 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AATA [Show Flanks]
Chromosome:: 1:23795627 (GRCh38)
1:24122118 (GRCh37)
Canonical SPDI:: NC_000001.11:23795627:TAAATA:TAAATAAATA
Gene:: GALE (Varview), LYPLA2 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAAATAAATA=0.000071/1 (ALFA)
TAAA=0.000008/2 (TOPMED)
TAAA=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.23795630_23795633dup, NC_000001.10:g.24122120_24122123dup, NG_007068.1:g.10174_10177dup, NM_000403.4:c.*318_*321dup, NM_000403.3:c.*318_*321dup, NM_001127621.2:c.*318_*321dup, NM_001127621.1:c.*318_*321dup, NM_001008216.2:c.*318_*321dup, NM_001008216.1:c.*318_*321dup

Select item 14858810467.

rs1485881046 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:23793499 (GRCh38)
1:24119989 (GRCh37)
Canonical SPDI:: NC_000001.11:23793498:G:A,NC_000001.11:23793498:G:T
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.23793499G>A, NC_000001.11:g.23793499G>T, NC_000001.10:g.24119989G>A, NC_000001.10:g.24119989G>T, XR_947067.3:n.34C>T, XR_947067.3:n.34C>A, XR_947067.2:n.267C>T, XR_947067.2:n.267C>A, XR_947067.1:n.200C>T, XR_947067.1:n.200C>A

Select item 14854631878.

rs1485463187 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:23789413 (GRCh38)
1:24115903 (GRCh37)
Canonical SPDI:: NC_000001.11:23789412:A:T
Gene:: LYPLA2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.23789413A>T, NC_000001.10:g.24115903A>T

Select item 14851838979.

rs1485183897 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:23794150 (GRCh38)
1:24120640 (GRCh37)
Canonical SPDI:: NC_000001.11:23794149:G:C
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000001.11:g.23794150G>C, NC_000001.10:g.24120640G>C, NG_007068.1:g.11655C>G

Select item 148457612010.

rs1484576120 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 1:23791324 (GRCh38)
1:24117814 (GRCh37)
Canonical SPDI:: NC_000001.11:23791323:A:G,NC_000001.11:23791323:A:T
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00202/24 (ALFA)
T=0.00005/1 (GnomAD)
G=0.0395/114 (KOREAN)
HGVS:: NC_000001.11:g.23791324A>G, NC_000001.11:g.23791324A>T, NC_000001.10:g.24117814A>G, NC_000001.10:g.24117814A>T

Select item 148455650411.

rs1484556504 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 1:23791381 (GRCh38)
1:24117871 (GRCh37)
Canonical SPDI:: NC_000001.11:23791380:A:C,NC_000001.11:23791380:A:T
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
T=0.000142/2 (TOMMO)
T=0.000343/1 (KOREAN)
HGVS:: NC_000001.11:g.23791381A>C, NC_000001.11:g.23791381A>T, NC_000001.10:g.24117871A>C, NC_000001.10:g.24117871A>T

Select item 148451676612.

rs1484516766 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:23795873 (GRCh38)
1:24122363 (GRCh37)
Canonical SPDI:: NC_000001.11:23795872:C:T
Gene:: GALE (Varview), LYPLA2 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.23795873C>T, NC_000001.10:g.24122363C>T, NG_007068.1:g.9932G>A, NM_000403.4:c.*76G>A, NM_000403.3:c.*76G>A, NM_001127621.2:c.*76G>A, NM_001127621.1:c.*76G>A, NM_001008216.2:c.*76G>A, NM_001008216.1:c.*76G>A

Select item 148446941313.

rs1484469413 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:23790234 (GRCh38)
1:24116724 (GRCh37)
Canonical SPDI:: NC_000001.11:23790233:A:G
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.23790234A>G, NC_000001.10:g.24116724A>G

Select item 148358270014.

rs1483582700 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:23793699 (GRCh38)
1:24120189 (GRCh37)
Canonical SPDI:: NC_000001.11:23793698:C:T
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.23793699C>T, NC_000001.10:g.24120189C>T, NG_007068.1:g.12106G>A

Select item 148353385415.

rs1483533854 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:23792479 (GRCh38)
1:24118969 (GRCh37)
Canonical SPDI:: NC_000001.11:23792478:T:G
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.23792479T>G, NC_000001.10:g.24118969T>G

Select item 148317312716.

rs1483173127 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:23793100 (GRCh38)
1:24119590 (GRCh37)
Canonical SPDI:: NC_000001.11:23793099:A:G
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.23793100A>G, NC_000001.10:g.24119590A>G

Select item 148292241317.

rs1482922413 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:23795881 (GRCh38)
1:24122371 (GRCh37)
Canonical SPDI:: NC_000001.11:23795880:T:C,NC_000001.11:23795880:T:G
Gene:: GALE (Varview), LYPLA2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.23795881T>C, NC_000001.11:g.23795881T>G, NC_000001.10:g.24122371T>C, NC_000001.10:g.24122371T>G, NG_007068.1:g.9924A>G, NG_007068.1:g.9924A>C, NM_000403.4:c.*68A>G, NM_000403.4:c.*68A>C, NM_000403.3:c.*68A>G, NM_000403.3:c.*68A>C, NM_001127621.2:c.*68A>G, NM_001127621.2:c.*68A>C, NM_001127621.1:c.*68A>G, NM_001127621.1:c.*68A>C, NM_001008216.2:c.*68A>G, NM_001008216.2:c.*68A>C, NM_001008216.1:c.*68A>G, NM_001008216.1:c.*68A>C

Select item 148289796318.

rs1482897963 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:23792809 (GRCh38)
1:24119299 (GRCh37)
Canonical SPDI:: NC_000001.11:23792808:G:A
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.23792809G>A, NC_000001.10:g.24119299G>A

Select item 148244886119.

rs1482448861 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:23794023 (GRCh38)
1:24120513 (GRCh37)
Canonical SPDI:: NC_000001.11:23794022:T:C
Gene:: LYPLA2 (Varview), LOC105376860 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.23794023T>C, NC_000001.10:g.24120513T>C, NG_007068.1:g.11782A>G

Select item 148191960920.

rs1481919609 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:23789713 (GRCh38)
1:24116203 (GRCh37)
Canonical SPDI:: NC_000001.11:23789712:T:G
Gene:: LYPLA2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000049/13 (TOPMED)
G=0.00005/7 (GnomAD)
G=0.000156/1 (1000Genomes)
G=0.000342/1 (KOREAN)
G=0.000546/1 (Korea1K)
G=0.000955/16 (TOMMO)
HGVS:: NC_000001.11:g.23789713T>G, NC_000001.10:g.24116203T>G