Links from Gene
Items: 1 to 20 of 1000
1.
rs1491549281 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CA>-
[Show Flanks]
- Chromosome:
- 10:119936543
(GRCh38)
10:121696055
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119936542:CA:
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0.00017/2
(
ALFA)
-=0.00166/47
(TOMMO)
- HGVS:
3.
rs1491428898 has merged into rs3981101 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CACA>-,CA,CACACA,CACACACA
[Show Flanks]
- Chromosome:
- 10:119942352
(GRCh38)
10:121701864
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119942344:ACACACACACA:ACACACA,NC_000010.11:119942344:ACACACACACA:ACACACACA,NC_000010.11:119942344:ACACACACACA:ACACACACACACA,NC_000010.11:119942344:ACACACACACA:ACACACACACACACA
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- downstream_transcript_variant,3_prime_UTR_variant,non_coding_transcript_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ACACACACA=0./0
(
ALFA)
-=0.000045/12
(TOPMED)
AC=0.06/36
(NorthernSweden)
AC=0.101038/506
(1000Genomes)
AC=0.191048/350
(Korea1K)
- HGVS:
NC_000010.11:g.119942346CA[3], NC_000010.11:g.119942346CA[4], NC_000010.11:g.119942346CA[6], NC_000010.11:g.119942346CA[7], NC_000010.10:g.121701858CA[3], NC_000010.10:g.121701858CA[4], NC_000010.10:g.121701858CA[6], NC_000010.10:g.121701858CA[7], NM_007190.4:c.*1781CA[3], NM_007190.4:c.*1781CA[4], NM_007190.4:c.*1781CA[6], NM_007190.4:c.*1781CA[7], NM_007190.3:c.*1781CA[3], NM_007190.3:c.*1781CA[4], NM_007190.3:c.*1781CA[6], NM_007190.3:c.*1781CA[7], XM_005269469.4:c.*1781CA[3], XM_005269469.4:c.*1781CA[4], XM_005269469.4:c.*1781CA[6], XM_005269469.4:c.*1781CA[7], NR_037771.2:n.4304CA[3], NR_037771.2:n.4304CA[4], NR_037771.2:n.4304CA[6], NR_037771.2:n.4304CA[7], NR_037771.1:n.4461CA[3], NR_037771.1:n.4461CA[4], NR_037771.1:n.4461CA[6], NR_037771.1:n.4461CA[7], NM_001411070.1:c.*1781CA[3], NM_001411070.1:c.*1781CA[4], NM_001411070.1:c.*1781CA[6], NM_001411070.1:c.*1781CA[7]
4.
rs1491253539 has merged into rs71019733 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAAAAA>-,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 10:119931279
(GRCh38)
10:121690791
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000010.11:119931271:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000010.11:g.119931279_119931289del, NC_000010.11:g.119931283_119931289del, NC_000010.11:g.119931284_119931289del, NC_000010.11:g.119931286_119931289del, NC_000010.11:g.119931287_119931289del, NC_000010.11:g.119931288_119931289del, NC_000010.11:g.119931289del, NC_000010.11:g.119931289dup, NC_000010.11:g.119931288_119931289dup, NC_000010.10:g.121690791_121690801del, NC_000010.10:g.121690795_121690801del, NC_000010.10:g.121690796_121690801del, NC_000010.10:g.121690798_121690801del, NC_000010.10:g.121690799_121690801del, NC_000010.10:g.121690800_121690801del, NC_000010.10:g.121690801del, NC_000010.10:g.121690801dup, NC_000010.10:g.121690800_121690801dup
5.
rs1491203416 has merged into rs35075710 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAAAAAAAAAAA>-,AAAA,AAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 10:119936548
(GRCh38)
10:121696060
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:119936543:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAA=0./0
(
ALFA)
AAAAA=0.000008/2
(TOPMED)
- HGVS:
NC_000010.11:g.119936548_119936564del, NC_000010.11:g.119936552_119936564del, NC_000010.11:g.119936553_119936564del, NC_000010.11:g.119936555_119936564del, NC_000010.11:g.119936557_119936564del, NC_000010.11:g.119936559_119936564del, NC_000010.11:g.119936560_119936564del, NC_000010.11:g.119936561_119936564del, NC_000010.11:g.119936562_119936564del, NC_000010.11:g.119936563_119936564del, NC_000010.11:g.119936564del, NC_000010.11:g.119936564dup, NC_000010.11:g.119936563_119936564dup, NC_000010.11:g.119936562_119936564dup, NC_000010.11:g.119936561_119936564dup, NC_000010.11:g.119936560_119936564dup, NC_000010.11:g.119936559_119936564dup, NC_000010.10:g.121696060_121696076del, NC_000010.10:g.121696064_121696076del, NC_000010.10:g.121696065_121696076del, NC_000010.10:g.121696067_121696076del, NC_000010.10:g.121696069_121696076del, NC_000010.10:g.121696071_121696076del, NC_000010.10:g.121696072_121696076del, NC_000010.10:g.121696073_121696076del, NC_000010.10:g.121696074_121696076del, NC_000010.10:g.121696075_121696076del, NC_000010.10:g.121696076del, NC_000010.10:g.121696076dup, NC_000010.10:g.121696075_121696076dup, NC_000010.10:g.121696074_121696076dup, NC_000010.10:g.121696073_121696076dup, NC_000010.10:g.121696072_121696076dup, NC_000010.10:g.121696071_121696076dup
6.
rs1491165185 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- GA>-
[Show Flanks]
- Chromosome:
- 10:119894936
(GRCh38)
10:121654448
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119894935:GA:
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.01133/42
(TWINSUK)
-=0.01687/65
(ALSPAC)
- HGVS:
7.
rs1491156635 has merged into rs398046283 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTT>-,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 10:119915735
(GRCh38)
10:121675247
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000010.11:119915726:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTTTTTTTTTTT=0.00004/1
(
ALFA)
TT=0.04/24
(NorthernSweden)
TT=0.04558/169
(TWINSUK)
TT=0.05138/198
(ALSPAC)
- HGVS:
NC_000010.11:g.119915735_119915738del, NC_000010.11:g.119915737_119915738del, NC_000010.11:g.119915738del, NC_000010.11:g.119915738dup, NC_000010.11:g.119915737_119915738dup, NC_000010.11:g.119915736_119915738dup, NC_000010.11:g.119915735_119915738dup, NC_000010.11:g.119915734_119915738dup, NC_000010.11:g.119915733_119915738dup, NC_000010.11:g.119915728_119915738dup, NC_000010.10:g.121675247_121675250del, NC_000010.10:g.121675249_121675250del, NC_000010.10:g.121675250del, NC_000010.10:g.121675250dup, NC_000010.10:g.121675249_121675250dup, NC_000010.10:g.121675248_121675250dup, NC_000010.10:g.121675247_121675250dup, NC_000010.10:g.121675246_121675250dup, NC_000010.10:g.121675245_121675250dup, NC_000010.10:g.121675240_121675250dup
8.
rs1491100859 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->T
[Show Flanks]
- Chromosome:
- 10:119923877
(GRCh38)
10:121683390
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119923877:TT:TTT
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTT=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
9.
rs1491086424 has merged into rs11289281 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 10:119940199
(GRCh38)
10:121699711
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000010.11:119940187:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTTTT=0./0
(
ALFA)
-=0.3259/1632
(1000Genomes)
- HGVS:
NC_000010.11:g.119940199_119940205del, NC_000010.11:g.119940203_119940205del, NC_000010.11:g.119940204_119940205del, NC_000010.11:g.119940205del, NC_000010.11:g.119940205dup, NC_000010.11:g.119940204_119940205dup, NC_000010.11:g.119940203_119940205dup, NC_000010.11:g.119940202_119940205dup, NC_000010.11:g.119940201_119940205dup, NC_000010.10:g.121699711_121699717del, NC_000010.10:g.121699715_121699717del, NC_000010.10:g.121699716_121699717del, NC_000010.10:g.121699717del, NC_000010.10:g.121699717dup, NC_000010.10:g.121699716_121699717dup, NC_000010.10:g.121699715_121699717dup, NC_000010.10:g.121699714_121699717dup, NC_000010.10:g.121699713_121699717dup
10.
rs1490925774 has merged into rs35657557 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TT>-,T,TTT,TTTT,TTTTTT
[Show Flanks]
- Chromosome:
- 10:119924437
(GRCh38)
10:121683949
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119924426:TTTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:119924426:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:119924426:TTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000010.11:119924426:TTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:119924426:TTTTTTTTTTTT:TTTTTTTTTTTTTTTT
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTT=0./0
(
ALFA)
-=0.044078/11667
(TOPMED)
-=0.048004/178
(TWINSUK)
-=0.052413/202
(ALSPAC)
-=0.117812/590
(1000Genomes)
- HGVS:
11.
rs1490826167 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TCGAGTAACAGTTGAATTATTTCTTACCAAG>-
[Show Flanks]
- Chromosome:
- 10:119897659
(GRCh38)
10:121657171
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119897656:AGTCGAGTAACAGTTGAATTATTTCTTACCAAG:AG
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AG=0./0
(
ALFA)
-=0.000079/21
(TOPMED)
-=0.000093/13
(GnomAD)
- HGVS:
12.
rs1490750562 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 10:119893582
(GRCh38)
10:121653094
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119893581:C:T
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000084/1
(
ALFA)
T=0.000015/2
(GnomAD)
- HGVS:
13.
rs1490734020 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 10:119895251
(GRCh38)
10:121654763
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119895250:G:T
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000036/5
(GnomAD)
T=0.000057/15
(TOPMED)
- HGVS:
14.
rs1490708297 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 10:119918059
(GRCh38)
10:121677571
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119918058:T:G
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency
- MAF:
G=0.000004/1
(GnomAD_exomes)
- HGVS:
15.
rs1490707167 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 10:119907420
(GRCh38)
10:121666932
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119907419:A:T
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
T=0.000389/7
(TOMMO)
A=0.5/1
(SGDP_PRJ)
- HGVS:
17.
rs1490607484 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 10:119913073
(GRCh38)
10:121672585
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119913072:C:T
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
18.
rs1490430745 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 10:119939284
(GRCh38)
10:121698796
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119939283:A:G
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
19.
rs1490398534 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- A>-
[Show Flanks]
- Chromosome:
- 10:119915216
(GRCh38)
10:121674728
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119915215:A:
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000021/3
(GnomAD)
- HGVS:
20.
rs1490327570 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- T>-,TT
[Show Flanks]
- Chromosome:
- 10:119932500
(GRCh38)
10:121692012
(GRCh37)
- Canonical SPDI:
- NC_000010.11:119932499:TTTTTTT:TTTTTT,NC_000010.11:119932499:TTTTTTT:TTTTTTTT
- Gene:
- SEC23IP (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTT=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS: