SNP Links for Gene (Select 11126) - SNP

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Select item 14915875361.

rs1491587536 has merged into rs35767467 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:145737764 (GRCh38)
1:145697328 (GRCh37)
Canonical SPDI:: NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:145737751:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000001.11:g.145737764_145737770del, NC_000001.11:g.145737765_145737770del, NC_000001.11:g.145737766_145737770del, NC_000001.11:g.145737767_145737770del, NC_000001.11:g.145737768_145737770del, NC_000001.11:g.145737769_145737770del, NC_000001.11:g.145737770del, NC_000001.11:g.145737770dup, NC_000001.11:g.145737769_145737770dup, NC_000001.11:g.145737768_145737770dup, NC_000001.11:g.145737767_145737770dup, NC_000001.11:g.145737766_145737770dup, NC_000001.11:g.145737765_145737770dup, NC_000001.11:g.145737764_145737770dup, NC_000001.11:g.145737763_145737770dup, NC_000001.11:g.145737762_145737770dup, NC_000001.11:g.145737761_145737770dup, NC_000001.11:g.145737755_145737770dup, NW_003871055.3:g.2553177_2553183del, NW_003871055.3:g.2553178_2553183del, NW_003871055.3:g.2553179_2553183del, NW_003871055.3:g.2553180_2553183del, NW_003871055.3:g.2553181_2553183del, NW_003871055.3:g.2553182_2553183del, NW_003871055.3:g.2553183del, NW_003871055.3:g.2553183dup, NW_003871055.3:g.2553182_2553183dup, NW_003871055.3:g.2553181_2553183dup, NW_003871055.3:g.2553180_2553183dup, NW_003871055.3:g.2553179_2553183dup, NW_003871055.3:g.2553178_2553183dup, NW_003871055.3:g.2553177_2553183dup, NW_003871055.3:g.2553176_2553183dup, NW_003871055.3:g.2553175_2553183dup, NW_003871055.3:g.2553174_2553183dup, NW_003871055.3:g.2553168_2553183dup, NC_000001.10:g.145697329_145697335del, NC_000001.10:g.145697330_145697335del, NC_000001.10:g.145697331_145697335del, NC_000001.10:g.145697332_145697335del, NC_000001.10:g.145697333_145697335del, NC_000001.10:g.145697334_145697335del, NC_000001.10:g.145697335del, NC_000001.10:g.145697335dup, NC_000001.10:g.145697334_145697335dup, NC_000001.10:g.145697333_145697335dup, NC_000001.10:g.145697332_145697335dup, NC_000001.10:g.145697331_145697335dup, NC_000001.10:g.145697330_145697335dup, NC_000001.10:g.145697329_145697335dup, NC_000001.10:g.145697328_145697335dup, NC_000001.10:g.145697327_145697335dup, NC_000001.10:g.145697326_145697335dup, NC_000001.10:g.145697320_145697335dup, XM_005272929.4:c.*1463_*1469del, XM_005272929.4:c.*1464_*1469del, XM_005272929.4:c.*1465_*1469del, XM_005272929.4:c.*1466_*1469del, XM_005272929.4:c.*1467_*1469del, XM_005272929.4:c.*1468_*1469del, XM_005272929.4:c.*1469del, XM_005272929.4:c.*1469dup, XM_005272929.4:c.*1468_*1469dup, XM_005272929.4:c.*1467_*1469dup, XM_005272929.4:c.*1466_*1469dup, XM_005272929.4:c.*1465_*1469dup, XM_005272929.4:c.*1464_*1469dup, XM_005272929.4:c.*1463_*1469dup, XM_005272929.4:c.*1462_*1469dup, XM_005272929.4:c.*1461_*1469dup, XM_005272929.4:c.*1460_*1469dup, XM_005272929.4:c.*1454_*1469dup, XM_011509104.3:c.*1463_*1469del, XM_011509104.3:c.*1464_*1469del, XM_011509104.3:c.*1465_*1469del, XM_011509104.3:c.*1466_*1469del, XM_011509104.3:c.*1467_*1469del, XM_011509104.3:c.*1468_*1469del, XM_011509104.3:c.*1469del, XM_011509104.3:c.*1469dup, XM_011509104.3:c.*1468_*1469dup, XM_011509104.3:c.*1467_*1469dup, XM_011509104.3:c.*1466_*1469dup, XM_011509104.3:c.*1465_*1469dup, XM_011509104.3:c.*1464_*1469dup, XM_011509104.3:c.*1463_*1469dup, XM_011509104.3:c.*1462_*1469dup, XM_011509104.3:c.*1461_*1469dup, XM_011509104.3:c.*1460_*1469dup, XM_011509104.3:c.*1454_*1469dup

Select item 14910211112.

rs1491021111 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 1:145728523 (GRCh38)
1:145706564 (GRCh37)
Canonical SPDI:: NC_000001.11:145728522:TG:
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00506/60 (ALFA)
-=0.00273/77 (TOMMO)
HGVS:: NC_000001.11:g.145728523_145728524del, NW_003871055.3:g.2543936_2543937del, NC_000001.10:g.145706564_145706565del

Select item 14908903213.

rs1490890321 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:145730499 (GRCh38)
1:145704588 (GRCh37)
Canonical SPDI:: NC_000001.11:145730498:A:G
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.145730499A>G, NW_003871055.3:g.2545912A>G, NC_000001.10:g.145704588T>C

Select item 14908128604.

rs1490812860 has merged into rs782447631 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 1:145721799 (GRCh38)
1:145713286 (GRCh37)
Canonical SPDI:: NC_000001.11:145721798:T:
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0./0 (TWINSUK)
-=0.000008/2 (TOPMED)
-=0.000021/3 (GnomAD)
-=0.000259/1 (ALSPAC)
HGVS:: NC_000001.11:g.145721799del, NW_003871055.3:g.2537212del, NC_000001.10:g.145713286del

Select item 14906528395.

rs1490652839 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:145721332 (GRCh38)
1:145713753 (GRCh37)
Canonical SPDI:: NC_000001.11:145721331:T:C
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.145721332T>C, NW_003871055.3:g.2536745T>C, NC_000001.10:g.145713753A>G

Select item 14903737406.

rs1490373740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:145722510 (GRCh38)
1:145712575 (GRCh37)
Canonical SPDI:: NC_000001.11:145722509:A:G
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.145722510A>G, NW_003871055.3:g.2537923A>G, NC_000001.10:g.145712575T>C

Select item 14901906267.

rs1490190626 has merged into rs144285362 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 1:145727347 (GRCh38)
1:145707736 (GRCh37)
Canonical SPDI:: NC_000001.11:145727346:TTTT:TTT,NC_000001.11:145727346:TTTT:TTTTT
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0.325486/6028 (ALFA)
A=0.115741/25 (Vietnamese)
T=0.139192/255 (Korea1K)
T=0.1396/699 (1000Genomes)
T=0.156209/41347 (TOPMED)
A=0.159726/2677 (TOMMO)
T=0.162273/22702 (GnomAD)
A=0.201786/904 (Estonian)
A=0.216433/216 (GoNL)
A=0.226807/841 (TWINSUK)
A=0.229372/884 (ALSPAC)
A=0.23/138 (NorthernSweden)
A=0.25/10 (GENOME_DK)
HGVS:: NC_000001.11:g.145727350del, NC_000001.11:g.145727350dup, NW_003871055.3:g.2542763del, NW_003871055.3:g.2542763dup, NC_000001.10:g.145707738dup, NC_000001.10:g.145707737_145707738dup

Select item 14900607518.

rs1490060751 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:145723448 (GRCh38)
1:145711637 (GRCh37)
Canonical SPDI:: NC_000001.11:145723447:C:T
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
A=0.002738/8 (KOREAN)
A=0.002804/47 (TOMMO)
T=0.003275/6 (Korea1K)
HGVS:: NC_000001.11:g.145723448C>T, NW_003871055.3:g.2538861C>T, NC_000001.10:g.145711637G>A

Select item 14898501359.

rs1489850135 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:145731984 (GRCh38)
1:145703103 (GRCh37)
Canonical SPDI:: NC_000001.11:145731983:T:A
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.145731984T>A, NW_003871055.3:g.2547397T>A, NC_000001.10:g.145703103A>T

Select item 148957770610.

rs1489577706 [Homo sapiens]

Variant type:: DEL
Alleles:: TACT>- [Show Flanks]
Chromosome:: 1:145720478 (GRCh38)
1:145714604 (GRCh37)
Canonical SPDI:: NC_000001.11:145720477:TACT:
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.145720478_145720481del, NW_003871055.3:g.2535891_2535894del, NC_000001.10:g.145714604_145714607del

Select item 148955334011.

rs1489553340 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:145736669 (GRCh38)
1:145698417 (GRCh37)
Canonical SPDI:: NC_000001.11:145736669:T:TT
Gene:: CD160 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.145736670dup, NW_003871055.3:g.2552083dup, NC_000001.10:g.145698417dup, XM_005272929.4:c.*369dup, XM_005272929.2:c.*369dup, XM_011509104.3:c.*369dup, XM_011509104.1:c.*369dup

Select item 148948791812.

rs1489487918 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:145719298 (GRCh38)
1:145715787 (GRCh37)
Canonical SPDI:: NC_000001.11:145719297:G:A
Gene:: CD160 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.145719298G>A, NW_003871055.3:g.2534711G>A, NC_000001.10:g.145715787C>T

Select item 148902611613.

rs1489026116 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:145720381 (GRCh38)
1:145714704 (GRCh37)
Canonical SPDI:: NC_000001.11:145720380:T:C
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.145720381T>C, NW_003871055.3:g.2535794T>C, NC_000001.10:g.145714704A>G

Select item 148901321814.

rs1489013218 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:145736601 (GRCh38)
1:145698486 (GRCh37)
Canonical SPDI:: NC_000001.11:145736600:T:C
Gene:: CD160 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.145736601T>C, NW_003871055.3:g.2552014T>C, NC_000001.10:g.145698486A>G, XM_005272929.4:c.*300T>C, XM_005272929.2:c.*300T>C, XM_011509104.3:c.*300T>C, XM_011509104.1:c.*300T>C

Select item 148897913315.

rs1488979133 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:145736579 (GRCh38)
1:145698508 (GRCh37)
Canonical SPDI:: NC_000001.11:145736578:C:T
Gene:: CD160 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.145736579C>T, NW_003871055.3:g.2551992C>T, NC_000001.10:g.145698508G>A, XM_005272929.4:c.*278C>T, XM_005272929.2:c.*278C>T, XM_011509104.3:c.*278C>T, XM_011509104.1:c.*278C>T

Select item 148889169016.

rs1488891690 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:145719194 (GRCh38)
1:145715891 (GRCh37)
Canonical SPDI:: NC_000001.11:145719193:C:T
Gene:: CD160 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.145719194C>T, NW_003871055.3:g.2534607C>T, NC_000001.10:g.145715891G>A

Select item 148862233217.

rs1488622332 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 1:145737195 (GRCh38)
1:145697892 (GRCh37)
Canonical SPDI:: NC_000001.11:145737194:G:C,NC_000001.11:145737194:G:T
Gene:: CD160 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.145737195G>C, NC_000001.11:g.145737195G>T, NW_003871055.3:g.2552608G>C, NW_003871055.3:g.2552608G>T, NC_000001.10:g.145697892C>G, NC_000001.10:g.145697892C>A, XM_005272929.4:c.*894G>C, XM_005272929.4:c.*894G>T, XM_011509104.3:c.*894G>C, XM_011509104.3:c.*894G>T

Select item 148849862818.

rs1488498628 has merged into rs587712124 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 1:145723581 (GRCh38)
1:145711498 (GRCh37)
Canonical SPDI:: NC_000001.11:145723580:TTTTTTT:TTTTTT
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTT=0.000498/7 (ALFA)
-=0.000382/101 (TOPMED)
-=0.0004/56 (GnomAD)
A=0.999401/5005 (1000Genomes)
HGVS:: NC_000001.11:g.145723587del, NW_003871055.3:g.2539000del, NC_000001.10:g.145711504del

Select item 148841328319.

rs1488413283 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 1:145727972 (GRCh38)
1:145707114 (GRCh37)
Canonical SPDI:: NC_000001.11:145727971:G:
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.145727972del, NW_003871055.3:g.2543385del, NC_000001.10:g.145707114del

Select item 148838384520.

rs1488383845 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:145729075 (GRCh38)
1:145706013 (GRCh37)
Canonical SPDI:: NC_000001.11:145729074:T:C
Gene:: CD160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.145729075T>C, NW_003871055.3:g.2544488T>C, NC_000001.10:g.145706013A>G

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