SNP Links for Gene (Select 10821) - SNP

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Select item 14909285281.

rs1490928528 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:3392655 (GRCh38)
11:3413885 (GRCh37)
Canonical SPDI:: NC_000011.10:3392654:G:A
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.3392655G>A, NC_000011.9:g.3413885G>A

Select item 14899194262.

rs1489919426 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:3390458 (GRCh38)
11:3411688 (GRCh37)
Canonical SPDI:: NC_000011.10:3390457:T:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.3390458T>G, NC_000011.9:g.3411688T>G

Select item 14891254333.

rs1489125433 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:3391802 (GRCh38)
11:3413033 (GRCh37)
Canonical SPDI:: NC_000011.10:3391802:AAA:AAAA
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAA=0.000051/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000015/2 (GnomAD_exomes)
HGVS:: NC_000011.10:g.3391805dup, NC_000011.9:g.3413035dup, NR_044999.1:n.113dup

Select item 14888574844.

rs1488857484 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:3393694 (GRCh38)
11:3414924 (GRCh37)
Canonical SPDI:: NC_000011.10:3393693:G:T
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.3393694G>T, NC_000011.9:g.3414924G>T

Select item 14886334585.

rs1488633458 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:3391218 (GRCh38)
11:3412448 (GRCh37)
Canonical SPDI:: NC_000011.10:3391217:C:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00135/22 (ALFA)
G=0.00513/86 (TOMMO)
G=0.0089/57 (1000Genomes)
G=0.01129/33 (KOREAN)
G=0.01146/21 (Korea1K)
HGVS:: NC_000011.10:g.3391218C>G, NC_000011.9:g.3412448C>G, NR_044999.1:n.698G>C

Select item 14879525916.

rs1487952591 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:3392371 (GRCh38)
11:3413601 (GRCh37)
Canonical SPDI:: NC_000011.10:3392370:T:C,NC_000011.10:3392370:T:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000011.10:g.3392371T>C, NC_000011.10:g.3392371T>G, NC_000011.9:g.3413601T>C, NC_000011.9:g.3413601T>G

Select item 14875284257.

rs1487528425 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:3392043 (GRCh38)
11:3413273 (GRCh37)
Canonical SPDI:: NC_000011.10:3392042:T:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3392043T>G, NC_000011.9:g.3413273T>G

Select item 14874341258.

rs1487434125 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:3393150 (GRCh38)
11:3414380 (GRCh37)
Canonical SPDI:: NC_000011.10:3393149:A:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3393150A>G, NC_000011.9:g.3414380A>G

Select item 14869062209.

rs1486906220 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:3392862 (GRCh38)
11:3414092 (GRCh37)
Canonical SPDI:: NC_000011.10:3392861:A:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00845/138 (ALFA)
G=0.01624/459 (TOMMO)
G=0.02498/160 (1000Genomes)
G=0.02806/82 (KOREAN)
HGVS:: NC_000011.10:g.3392862A>G, NC_000011.9:g.3414092A>G

Select item 148680251710.

rs1486802517 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:3391389 (GRCh38)
11:3412619 (GRCh37)
Canonical SPDI:: NC_000011.10:3391388:C:T
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000012/2 (GnomAD_exomes)
T=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.3391389C>T, NC_000011.9:g.3412619C>T, NR_044999.1:n.527G>A

Select item 148608875011.

rs1486088750 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:3392990 (GRCh38)
11:3414220 (GRCh37)
Canonical SPDI:: NC_000011.10:3392989:G:A
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.3392990G>A, NC_000011.9:g.3414220G>A

Select item 148550117312.

rs1485501173 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:3393076 (GRCh38)
11:3414306 (GRCh37)
Canonical SPDI:: NC_000011.10:3393075:C:T
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.3393076C>T, NC_000011.9:g.3414306C>T

Select item 148542710313.

rs1485427103 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:3390717 (GRCh38)
11:3411947 (GRCh37)
Canonical SPDI:: NC_000011.10:3390716:G:A
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.3390717G>A, NC_000011.9:g.3411947G>A, NR_044999.1:n.1199C>T

Select item 148537779714.

rs1485377797 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:3390946 (GRCh38)
11:3412176 (GRCh37)
Canonical SPDI:: NC_000011.10:3390945:A:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.3390946A>G, NC_000011.9:g.3412176A>G, NR_044999.1:n.970T>C

Select item 148510535915.

rs1485105359 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGACGTGG>- [Show Flanks]
Chromosome:: 11:3393507 (GRCh38)
11:3414737 (GRCh37)
Canonical SPDI:: NC_000011.10:3393505:GAGACGTGG:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3393507_3393514del, NC_000011.9:g.3414737_3414744del

Select item 148418585016.

rs1484185850 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:3391729 (GRCh38)
11:3412959 (GRCh37)
Canonical SPDI:: NC_000011.10:3391728:A:G,NC_000011.10:3391728:A:T
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3391729A>G, NC_000011.10:g.3391729A>T, NC_000011.9:g.3412959A>G, NC_000011.9:g.3412959A>T, NR_044999.1:n.187T>C, NR_044999.1:n.187T>A

Select item 148388934217.

rs1483889342 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 11:3393525 (GRCh38)
11:3414755 (GRCh37)
Canonical SPDI:: NC_000011.10:3393524:T:A,NC_000011.10:3393524:T:C
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.3393525T>A, NC_000011.10:g.3393525T>C, NC_000011.9:g.3414755T>A, NC_000011.9:g.3414755T>C

Select item 148340157918.

rs1483401579 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:3392893 (GRCh38)
11:3414123 (GRCh37)
Canonical SPDI:: NC_000011.10:3392892:C:T
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.3392893C>T, NC_000011.9:g.3414123C>T

Select item 148291048219.

rs1482910482 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:3393843 (GRCh38)
11:3415073 (GRCh37)
Canonical SPDI:: NC_000011.10:3393842:A:G
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.3393843A>G, NC_000011.9:g.3415073A>G

Select item 148288498520.

rs1482884985 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:3390875 (GRCh38)
11:3412105 (GRCh37)
Canonical SPDI:: NC_000011.10:3390874:A:G,NC_000011.10:3390874:A:T
Gene:: OR7E12P (Varview), TSSC2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00005/1 (ALFA)
HGVS:: NC_000011.10:g.3390875A>G, NC_000011.10:g.3390875A>T, NC_000011.9:g.3412105A>G, NC_000011.9:g.3412105A>T, NR_044999.1:n.1041T>C, NR_044999.1:n.1041T>A

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