SNP Links for Gene (Select 107984317) - SNP

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Select item 14896391551.

rs1489639155 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:17857166 (GRCh38)
11:17878713 (GRCh37)
Canonical SPDI:: NC_000011.10:17857165:C:A,NC_000011.10:17857165:C:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.00006/1 (TOMMO)
HGVS:: NC_000011.10:g.17857166C>A, NC_000011.10:g.17857166C>T, NC_000011.9:g.17878713C>A, NC_000011.9:g.17878713C>T, XR_007062610.1:n.6708G>T, XR_007062610.1:n.6708G>A

Select item 14892054922.

rs1489205492 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 11:17854827 (GRCh38)
11:17876374 (GRCh37)
Canonical SPDI:: NC_000011.10:17854826:T:
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.17854827del, NC_000011.9:g.17876374del, XR_001748144.2:n.6330del, XR_001748144.1:n.2086del, XR_007062610.1:n.9047del

Select item 14891132803.

rs1489113280 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:17850969 (GRCh38)
11:17872516 (GRCh37)
Canonical SPDI:: NC_000011.10:17850968:T:A
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.17850969T>A, NC_000011.9:g.17872516T>A, XR_001748144.2:n.3595T>A, XR_007062610.1:n.12905A>T

Select item 14890611054.

rs1489061105 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:17852191 (GRCh38)
11:17873738 (GRCh37)
Canonical SPDI:: NC_000011.10:17852190:G:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.17852191G>T, NC_000011.9:g.17873738G>T, XR_001748144.2:n.4817G>T, XR_001748144.1:n.573G>T, XR_007062610.1:n.11683C>A

Select item 14889902605.

rs1488990260 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:17856024 (GRCh38)
11:17877571 (GRCh37)
Canonical SPDI:: NC_000011.10:17856023:G:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.17856024G>T, NC_000011.9:g.17877571G>T, XR_001748144.2:n.7527G>T, XR_001748144.1:n.3283G>T, XR_007062610.1:n.7850C>A

Select item 14886682266.

rs1488668226 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:17856615 (GRCh38)
11:17878162 (GRCh37)
Canonical SPDI:: NC_000011.10:17856614:C:A
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.17856615C>A, NC_000011.9:g.17878162C>A, XR_001748144.2:n.8118C>A, XR_001748144.1:n.3874C>A, XR_007062610.1:n.7259G>T

Select item 14886559207.

rs1488655920 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:17857817 (GRCh38)
11:17879364 (GRCh37)
Canonical SPDI:: NC_000011.10:17857816:A:T
Gene:: SERGEF (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.17857817A>T, NC_000011.9:g.17879364A>T, XR_007062610.1:n.6057T>A

Select item 14884438858.

rs1488443885 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:17849792 (GRCh38)
11:17871339 (GRCh37)
Canonical SPDI:: NC_000011.10:17849791:T:C
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000011.10:g.17849792T>C, NC_000011.9:g.17871339T>C, XR_001748144.2:n.2418T>C, XR_007062610.1:n.14082A>G

Select item 14884331739.

rs1488433173 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:17851089 (GRCh38)
11:17872636 (GRCh37)
Canonical SPDI:: NC_000011.10:17851088:T:C
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.17851089T>C, NC_000011.9:g.17872636T>C, XR_001748144.2:n.3715T>C, XR_007062610.1:n.12785A>G

Select item 148801095610.

rs1488010956 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:17855442 (GRCh38)
11:17876989 (GRCh37)
Canonical SPDI:: NC_000011.10:17855441:G:A
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.17855442G>A, NC_000011.9:g.17876989G>A, XR_001748144.2:n.6945G>A, XR_001748144.1:n.2701G>A, XR_007062610.1:n.8432C>T

Select item 148725837111.

rs1487258371 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:17852874 (GRCh38)
11:17874421 (GRCh37)
Canonical SPDI:: NC_000011.10:17852873:C:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.17852874C>T, NC_000011.9:g.17874421C>T, XR_001748144.2:n.5500C>T, XR_001748144.1:n.1256C>T, XR_007062610.1:n.11000G>A

Select item 148667562212.

rs1486675622 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:17856672 (GRCh38)
11:17878219 (GRCh37)
Canonical SPDI:: NC_000011.10:17856671:A:C
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.17856672A>C, NC_000011.9:g.17878219A>C, XR_001748144.2:n.8175A>C, XR_001748144.1:n.3931A>C, XR_007062610.1:n.7202T>G

Select item 148655853013.

rs1486558530 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:17857284 (GRCh38)
11:17878831 (GRCh37)
Canonical SPDI:: NC_000011.10:17857283:C:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.17857284C>T, NC_000011.9:g.17878831C>T, XR_007062610.1:n.6590G>A

Select item 148644463214.

rs1486444632 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:17856321 (GRCh38)
11:17877868 (GRCh37)
Canonical SPDI:: NC_000011.10:17856320:A:G
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.17856321A>G, NC_000011.9:g.17877868A>G, XR_001748144.2:n.7824A>G, XR_001748144.1:n.3580A>G, XR_007062610.1:n.7553T>C

Select item 148587855515.

rs1485878555 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:17852601 (GRCh38)
11:17874148 (GRCh37)
Canonical SPDI:: NC_000011.10:17852600:A:G
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.17852601A>G, NC_000011.9:g.17874148A>G, XR_001748144.2:n.5227A>G, XR_001748144.1:n.983A>G, XR_007062610.1:n.11273T>C

Select item 148569708216.

rs1485697082 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:17855269 (GRCh38)
11:17876816 (GRCh37)
Canonical SPDI:: NC_000011.10:17855268:A:G
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.17855269A>G, NC_000011.9:g.17876816A>G, XR_001748144.2:n.6772A>G, XR_001748144.1:n.2528A>G, XR_007062610.1:n.8605T>C

Select item 148531828017.

rs1485318280 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:17852766 (GRCh38)
11:17874313 (GRCh37)
Canonical SPDI:: NC_000011.10:17852765:C:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.17852766C>T, NC_000011.9:g.17874313C>T, XR_001748144.2:n.5392C>T, XR_001748144.1:n.1148C>T, XR_007062610.1:n.11108G>A

Select item 148526322418.

rs1485263224 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:17850201 (GRCh38)
11:17871748 (GRCh37)
Canonical SPDI:: NC_000011.10:17850200:C:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000045/12 (TOPMED)
T=0.000071/1 (TOMMO)
T=0.000684/2 (KOREAN)
HGVS:: NC_000011.10:g.17850201C>T, NC_000011.9:g.17871748C>T, XR_001748144.2:n.2827C>T, XR_007062610.1:n.13673G>A

Select item 148498450119.

rs1484984501 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:17852407 (GRCh38)
11:17873954 (GRCh37)
Canonical SPDI:: NC_000011.10:17852406:G:A
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.17852407G>A, NC_000011.9:g.17873954G>A, XR_001748144.2:n.5033G>A, XR_001748144.1:n.789G>A, XR_007062610.1:n.11467C>T

Select item 148434970120.

rs1484349701 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:17851184 (GRCh38)
11:17872731 (GRCh37)
Canonical SPDI:: NC_000011.10:17851183:C:G,NC_000011.10:17851183:C:T
Gene:: SERGEF (Varview), LOC107984317 (Varview), LOC124902642 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.17851184C>G, NC_000011.10:g.17851184C>T, NC_000011.9:g.17872731C>G, NC_000011.9:g.17872731C>T, XR_001748144.2:n.3810C>G, XR_001748144.2:n.3810C>T, XR_007062610.1:n.12690G>C, XR_007062610.1:n.12690G>A

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