SNP Links for Gene (Select 105755953) - SNP

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Select item 14914881541.

rs1491488154 has merged into rs3073060 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACA>-,CACA,CACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA [Show Flanks]
Chromosome:: 10:8911897 (GRCh38)
10:8953860 (GRCh37)
Canonical SPDI:: NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000010.11:8911881:ACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000010.11:g.8911883CA[7], NC_000010.11:g.8911883CA[9], NC_000010.11:g.8911883CA[10], NC_000010.11:g.8911883CA[12], NC_000010.11:g.8911883CA[13], NC_000010.11:g.8911883CA[14], NC_000010.11:g.8911883CA[15], NC_000010.11:g.8911883CA[16], NC_000010.11:g.8911883CA[17], NC_000010.10:g.8953846CA[7], NC_000010.10:g.8953846CA[9], NC_000010.10:g.8953846CA[10], NC_000010.10:g.8953846CA[12], NC_000010.10:g.8953846CA[13], NC_000010.10:g.8953846CA[14], NC_000010.10:g.8953846CA[15], NC_000010.10:g.8953846CA[16], NC_000010.10:g.8953846CA[17]

Select item 14908714252.

rs1490871425 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:8906055 (GRCh38)
10:8948018 (GRCh37)
Canonical SPDI:: NC_000010.11:8906054:G:A,NC_000010.11:8906054:G:T
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.8906055G>A, NC_000010.11:g.8906055G>T, NC_000010.10:g.8948018G>A, NC_000010.10:g.8948018G>T

Select item 14908263753.

rs1490826375 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:8898062 (GRCh38)
10:8940025 (GRCh37)
Canonical SPDI:: NC_000010.11:8898061:T:C
Gene:: LINC02676 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8898062T>C, NC_000010.10:g.8940025T>C, NR_131944.1:n.74T>C

Select item 14907515304.

rs1490751530 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTTT [Show Flanks]
Chromosome:: 10:8906705 (GRCh38)
10:8948669 (GRCh37)
Canonical SPDI:: NC_000010.11:8906705:TGTTT:TGTTTGTTT
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGTTTGTTT=0.0002/1 (ALFA)
TGTT=0.0002/1 (Estonian)
HGVS:: NC_000010.11:g.8906707_8906710dup, NC_000010.10:g.8948670_8948673dup

Select item 14906632835.

rs1490663283 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:8897575 (GRCh38)
10:8939538 (GRCh37)
Canonical SPDI:: NC_000010.11:8897574:G:A
Gene:: LINC02676 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.8897575G>A, NC_000010.10:g.8939538G>A

Select item 14906374776.

rs1490637477 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:8898765 (GRCh38)
10:8940728 (GRCh37)
Canonical SPDI:: NC_000010.11:8898764:G:A
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8898765G>A, NC_000010.10:g.8940728G>A

Select item 14906008797.

rs1490600879 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:8914053 (GRCh38)
10:8956016 (GRCh37)
Canonical SPDI:: NC_000010.11:8914052:C:T
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.8914053C>T, NC_000010.10:g.8956016C>T

Select item 14905890498.

rs1490589049 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:8905746 (GRCh38)
10:8947709 (GRCh37)
Canonical SPDI:: NC_000010.11:8905745:A:G
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.8905746A>G, NC_000010.10:g.8947709A>G

Select item 14904615579.

rs1490461557 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:8908006 (GRCh38)
10:8949969 (GRCh37)
Canonical SPDI:: NC_000010.11:8908005:C:G
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.8908006C>G, NC_000010.10:g.8949969C>G

Select item 149027449610.

rs1490274496 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:8904686 (GRCh38)
10:8946649 (GRCh37)
Canonical SPDI:: NC_000010.11:8904685:T:C
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000009/1 (GnomAD)
HGVS:: NC_000010.11:g.8904686T>C, NC_000010.10:g.8946649T>C

Select item 149005290811.

rs1490052908 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:8905653 (GRCh38)
10:8947616 (GRCh37)
Canonical SPDI:: NC_000010.11:8905652:T:C
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8905653T>C, NC_000010.10:g.8947616T>C

Select item 149003986712.

rs1490039867 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:8906666 (GRCh38)
10:8948629 (GRCh37)
Canonical SPDI:: NC_000010.11:8906665:T:C
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8906666T>C, NC_000010.10:g.8948629T>C

Select item 148988888213.

rs1489888882 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:8905233 (GRCh38)
10:8947196 (GRCh37)
Canonical SPDI:: NC_000010.11:8905232:C:A
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8905233C>A, NC_000010.10:g.8947196C>A

Select item 148984700914.

rs1489847009 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCT [Show Flanks]
Chromosome:: 10:8897175 (GRCh38)
10:8939139 (GRCh37)
Canonical SPDI:: NC_000010.11:8897175:CCT:CCTCCT
Gene:: LINC02676 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCTCCT=0./0 (ALFA)
CCT=0.000014/2 (GnomAD)
CCT=0.000034/9 (TOPMED)
HGVS:: NC_000010.11:g.8897176_8897178dup, NC_000010.10:g.8939139_8939141dup

Select item 148966948415.

rs1489669484 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 148958822516.

rs1489588225 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:8913431 (GRCh38)
10:8955394 (GRCh37)
Canonical SPDI:: NC_000010.11:8913430:T:A
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.8913431T>A, NC_000010.10:g.8955394T>A

Select item 148948774117.

rs1489487741 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:8911348 (GRCh38)
10:8953311 (GRCh37)
Canonical SPDI:: NC_000010.11:8911347:T:G
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.0002/1 (ALFA)
G=0.0002/1 (Estonian)
HGVS:: NC_000010.11:g.8911348T>G, NC_000010.10:g.8953311T>G

Select item 148902567918.

rs1489025679 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:8896358 (GRCh38)
10:8938321 (GRCh37)
Canonical SPDI:: NC_000010.11:8896357:G:A
Gene:: LINC02676 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000010.11:g.8896358G>A, NC_000010.10:g.8938321G>A

Select item 148882629519.

rs1488826295 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:8901191 (GRCh38)
10:8943154 (GRCh37)
Canonical SPDI:: NC_000010.11:8901190:T:C
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.8901191T>C, NC_000010.10:g.8943154T>C

Select item 148869619620.

rs1488696196 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 10:8904062 (GRCh38)
10:8946025 (GRCh37)
Canonical SPDI:: NC_000010.11:8904061:A:G,NC_000010.11:8904061:A:T
Gene:: LINC02676 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.8904062A>G, NC_000010.11:g.8904062A>T, NC_000010.10:g.8946025A>G, NC_000010.10:g.8946025A>T

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