SNP Links for Gene (Select 105378788) - SNP

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Select item 14915818911.

rs1491581891 has merged into rs34775324 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAAAAAAAAAAGAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:69430645 (GRCh38)
1:69896328 (GRCh37)
Canonical SPDI:: NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0.0001/1 (ALFA)
A=0.4989/2039 (1000Genomes)
HGVS:: NC_000001.11:g.69430645_69430647del, NC_000001.11:g.69430646_69430647del, NC_000001.11:g.69430647del, NC_000001.11:g.69430647dup, NC_000001.11:g.69430646_69430647dup, NC_000001.11:g.69430635_69430647A[24]GAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000001.10:g.69896328_69896330del, NC_000001.10:g.69896329_69896330del, NC_000001.10:g.69896330del, NC_000001.10:g.69896330dup, NC_000001.10:g.69896329_69896330dup, NC_000001.10:g.69896318_69896330A[24]GAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA[1]

Select item 14914273302.

rs1491427330 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 1:69430634 (GRCh38)
1:69896317 (GRCh37)
Canonical SPDI:: NC_000001.11:69430633:GA:
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.69430634_69430635del, NC_000001.10:g.69896317_69896318del

Select item 14910698723.

rs1491069872 has merged into rs34775324 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAAAAAAAAAAGAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:69430645 (GRCh38)
1:69896328 (GRCh37)
Canonical SPDI:: NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:69430634:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0.0001/1 (ALFA)
A=0.4989/2039 (1000Genomes)
HGVS:: NC_000001.11:g.69430645_69430647del, NC_000001.11:g.69430646_69430647del, NC_000001.11:g.69430647del, NC_000001.11:g.69430647dup, NC_000001.11:g.69430646_69430647dup, NC_000001.11:g.69430635_69430647A[24]GAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000001.10:g.69896328_69896330del, NC_000001.10:g.69896329_69896330del, NC_000001.10:g.69896330del, NC_000001.10:g.69896330dup, NC_000001.10:g.69896329_69896330dup, NC_000001.10:g.69896318_69896330A[24]GAAAAAGGAAAAGAAAAAAAAAAAAAAAAAAAAAAA[1]

Select item 14905942174.

rs1490594217 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:69432988 (GRCh38)
1:69898671 (GRCh37)
Canonical SPDI:: NC_000001.11:69432987:G:C
Gene:: LINC01758 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.69432988G>C, NC_000001.10:g.69898671G>C

Select item 14905283755.

rs1490528375 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:69434166 (GRCh38)
1:69899849 (GRCh37)
Canonical SPDI:: NC_000001.11:69434165:T:C
Gene:: LINC01758 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.69434166T>C, NC_000001.10:g.69899849T>C

Select item 14902665916.

rs1490266591 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:69434040 (GRCh38)
1:69899723 (GRCh37)
Canonical SPDI:: NC_000001.11:69434039:A:G
Gene:: LINC01758 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.69434040A>G, NC_000001.10:g.69899723A>G

Select item 14897601147.

rs1489760114 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:69433497 (GRCh38)
1:69899180 (GRCh37)
Canonical SPDI:: NC_000001.11:69433496:A:G
Gene:: LINC01758 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
HGVS:: NC_000001.11:g.69433497A>G, NC_000001.10:g.69899180A>G

Select item 14896282128.

rs1489628212 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:69434611 (GRCh38)
1:69900294 (GRCh37)
Canonical SPDI:: NC_000001.11:69434610:T:C
Gene:: LINC01758 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.69434611T>C, NC_000001.10:g.69900294T>C

Select item 14890081669.

rs1489008166 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:69435400 (GRCh38)
1:69901083 (GRCh37)
Canonical SPDI:: NC_000001.11:69435399:A:C
Gene:: LINC01758 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000684/2 (KOREAN)
C=0.001132/19 (TOMMO)
HGVS:: NC_000001.11:g.69435400A>C, NC_000001.10:g.69901083A>C, NR_147164.1:n.449A>C

Select item 148897575810.

rs1488975758 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:69435527 (GRCh38)
1:69901210 (GRCh37)
Canonical SPDI:: NC_000001.11:69435526:C:G,NC_000001.11:69435526:C:T
Gene:: LINC01758 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000108/2 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000035/1 (TOMMO)
T=0.000446/2 (Estonian)
G=0.000546/1 (Korea1K)
HGVS:: NC_000001.11:g.69435527C>G, NC_000001.11:g.69435527C>T, NC_000001.10:g.69901210C>G, NC_000001.10:g.69901210C>T

Select item 148649260511.

rs1486492605 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:69429531 (GRCh38)
1:69895214 (GRCh37)
Canonical SPDI:: NC_000001.11:69429530:G:A,NC_000001.11:69429530:G:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.69429531G>A, NC_000001.11:g.69429531G>C, NC_000001.10:g.69895214G>A, NC_000001.10:g.69895214G>C

Select item 148621183712.

rs1486211837 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:69430240 (GRCh38)
1:69895923 (GRCh37)
Canonical SPDI:: NC_000001.11:69430239:G:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.69430240G>C, NC_000001.10:g.69895923G>C

Select item 148613050313.

rs1486130503 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:69432321 (GRCh38)
1:69898004 (GRCh37)
Canonical SPDI:: NC_000001.11:69432320:T:C
Gene:: LINC01758 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.69432321T>C, NC_000001.10:g.69898004T>C

Select item 148609218014.

rs1486092180 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:69429935 (GRCh38)
1:69895618 (GRCh37)
Canonical SPDI:: NC_000001.11:69429934:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.69429935C>T, NC_000001.10:g.69895618C>T

Select item 148568586515.

rs1485685865 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 1:69430076 (GRCh38)
1:69895759 (GRCh37)
Canonical SPDI:: NC_000001.11:69430075:AAAAAA:AAAAA,NC_000001.11:69430075:AAAAAA:AAAAAAA
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0./0 (ALFA)
HGVS:: NC_000001.11:g.69430081del, NC_000001.11:g.69430081dup, NC_000001.10:g.69895764del, NC_000001.10:g.69895764dup

Select item 148485901916.

rs1484859019 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:69430057 (GRCh38)
1:69895740 (GRCh37)
Canonical SPDI:: NC_000001.11:69430056:T:C
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.69430057T>C, NC_000001.10:g.69895740T>C

Select item 148484112817.

rs1484841128 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:69431086 (GRCh38)
1:69896769 (GRCh37)
Canonical SPDI:: NC_000001.11:69431085:G:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.69431086G>C, NC_000001.10:g.69896769G>C

Select item 148424363518.

rs1484243635 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:69430889 (GRCh38)
1:69896572 (GRCh37)
Canonical SPDI:: NC_000001.11:69430888:T:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.69430889T>G, NC_000001.10:g.69896572T>G

Select item 148421336019.

rs1484213360 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:69431061 (GRCh38)
1:69896744 (GRCh37)
Canonical SPDI:: NC_000001.11:69431060:T:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.69431061T>A, NC_000001.10:g.69896744T>A

Select item 148419358520.

rs1484193585 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:69432078 (GRCh38)
1:69897761 (GRCh37)
Canonical SPDI:: NC_000001.11:69432077:G:A
Gene:: LINC01758 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000071/1 (TOMMO)
HGVS:: NC_000001.11:g.69432078G>A, NC_000001.10:g.69897761G>A

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