SNP Links for Gene (Select 105377303) - SNP

Links from Gene

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Select item 14913255831.

rs1491325583 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 4:80186457 (GRCh38)
4:81107611 (GRCh37)
Canonical SPDI:: NC_000004.12:80186456:TT:
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.003001/49 (ALFA)
-=0.000625/4 (1000Genomes)
-=0.000885/15 (TOMMO)
-=0.002735/373 (GnomAD)
HGVS:: NC_000004.12:g.80186457_80186458del, NC_000004.11:g.81107611_81107612del, NG_046725.1:g.6188_6189del

Select item 14911218942.

rs1491121894 has merged into rs1234830907 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,GG,GGGG,GGGGG,GGGGGG,GGGGGGG,GGGGGGGG [Show Flanks]
Chromosome:: 4:80187246 (GRCh38)
4:81108400 (GRCh37)
Canonical SPDI:: NC_000004.12:80187244:GGGG:G,NC_000004.12:80187244:GGGG:GGG,NC_000004.12:80187244:GGGG:GGGGG,NC_000004.12:80187244:GGGG:GGGGGG,NC_000004.12:80187244:GGGG:GGGGGGG,NC_000004.12:80187244:GGGG:GGGGGGGG,NC_000004.12:80187244:GGGG:GGGGGGGGG
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
-=0.00096/12 (TOMMO)
HGVS:: NC_000004.12:g.80187246_80187248del, NC_000004.12:g.80187248del, NC_000004.12:g.80187248dup, NC_000004.12:g.80187247_80187248dup, NC_000004.12:g.80187246_80187248dup, NC_000004.12:g.80187245_80187248dup, NC_000004.12:g.80187248_80187249insGGGGG, NC_000004.11:g.81108400_81108402del, NC_000004.11:g.81108402del, NC_000004.11:g.81108402dup, NC_000004.11:g.81108401_81108402dup, NC_000004.11:g.81108400_81108402dup, NC_000004.11:g.81108399_81108402dup, NC_000004.11:g.81108402_81108403insGGGGG, NG_046725.1:g.6977_6979del, NG_046725.1:g.6979del, NG_046725.1:g.6979dup, NG_046725.1:g.6978_6979dup, NG_046725.1:g.6977_6979dup, NG_046725.1:g.6976_6979dup, NG_046725.1:g.6979_6980insGGGGG

Select item 14911145063.

rs1491114506 [Homo sapiens]

Variant type:: INS
Alleles:: ->ATCTCTCTCTCTCTCTCTCTC [Show Flanks]
Chromosome:: 4:80186457 (GRCh38)
4:81107612 (GRCh37)
Canonical SPDI:: NC_000004.12:80186457::ATCTCTCTCTCTCTCTCTCTC
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000004.12:g.80186457_80186458insATCTCTCTCTCTCTCTCTCTC, NC_000004.11:g.81107611_81107612insATCTCTCTCTCTCTCTCTCTC, NG_046725.1:g.6188_6189insATCTCTCTCTCTCTCTCTCTC

Select item 14910227444.

rs1491022744 has merged into rs1553904276 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGAGAGAGAGAGAGA>-,GAGA,GAGAGA,GAGAGAGA,GAGAGAGAGA,GAGAGAGAGAGA,GAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA [Show Flanks]
Chromosome:: 4:80195944 (GRCh38)
4:81117098 (GRCh37)
Canonical SPDI:: NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA,NC_000004.12:80195928:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
Gene:: PRDM8 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAGAGAGAGAGAGAGA=0./0 (ALFA)
HGVS:: NC_000004.12:g.80195930GA[7], NC_000004.12:g.80195930GA[9], NC_000004.12:g.80195930GA[10], NC_000004.12:g.80195930GA[11], NC_000004.12:g.80195930GA[12], NC_000004.12:g.80195930GA[13], NC_000004.12:g.80195930GA[14], NC_000004.12:g.80195930GA[16], NC_000004.12:g.80195930GA[17], NC_000004.12:g.80195930GA[18], NC_000004.12:g.80195930GA[19], NC_000004.12:g.80195930GA[20], NC_000004.12:g.80195930GA[21], NC_000004.12:g.80195930GA[22], NC_000004.12:g.80195930GA[23], NC_000004.12:g.80195930GA[24], NC_000004.12:g.80195930GA[25], NC_000004.12:g.80195930GA[26], NC_000004.12:g.80195930GA[27], NC_000004.12:g.80195930GA[28], NC_000004.11:g.81117084GA[7], NC_000004.11:g.81117084GA[9], NC_000004.11:g.81117084GA[10], NC_000004.11:g.81117084GA[11], NC_000004.11:g.81117084GA[12], NC_000004.11:g.81117084GA[13], NC_000004.11:g.81117084GA[14], NC_000004.11:g.81117084GA[16], NC_000004.11:g.81117084GA[17], NC_000004.11:g.81117084GA[18], NC_000004.11:g.81117084GA[19], NC_000004.11:g.81117084GA[20], NC_000004.11:g.81117084GA[21], NC_000004.11:g.81117084GA[22], NC_000004.11:g.81117084GA[23], NC_000004.11:g.81117084GA[24], NC_000004.11:g.81117084GA[25], NC_000004.11:g.81117084GA[26], NC_000004.11:g.81117084GA[27], NC_000004.11:g.81117084GA[28], NG_046725.1:g.15661GA[7], NG_046725.1:g.15661GA[9], NG_046725.1:g.15661GA[10], NG_046725.1:g.15661GA[11], NG_046725.1:g.15661GA[12], NG_046725.1:g.15661GA[13], NG_046725.1:g.15661GA[14], NG_046725.1:g.15661GA[16], NG_046725.1:g.15661GA[17], NG_046725.1:g.15661GA[18], NG_046725.1:g.15661GA[19], NG_046725.1:g.15661GA[20], NG_046725.1:g.15661GA[21], NG_046725.1:g.15661GA[22], NG_046725.1:g.15661GA[23], NG_046725.1:g.15661GA[24], NG_046725.1:g.15661GA[25], NG_046725.1:g.15661GA[26], NG_046725.1:g.15661GA[27], NG_046725.1:g.15661GA[28]

Select item 14909053775.

rs1490905377 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:80194418 (GRCh38)
4:81115572 (GRCh37)
Canonical SPDI:: NC_000004.12:80194417:T:C
Gene:: PRDM8 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.80194418T>C, NC_000004.11:g.81115572T>C, NG_046725.1:g.14149T>C

Select item 14906369656.

rs1490636965 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 4:80187249 (GRCh38)
4:81108403 (GRCh37)
Canonical SPDI:: NC_000004.12:80187248:C:
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00009/8 (GnomAD)
HGVS:: NC_000004.12:g.80187249del, NC_000004.11:g.81108403del, NG_046725.1:g.6980del

Select item 14899265027.

rs1489926502 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 4:80193450 (GRCh38)
4:81114604 (GRCh37)
Canonical SPDI:: NC_000004.12:80193449:C:A,NC_000004.12:80193449:C:T
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.80193450C>A, NC_000004.12:g.80193450C>T, NC_000004.11:g.81114604C>A, NC_000004.11:g.81114604C>T, NG_046725.1:g.13181C>A, NG_046725.1:g.13181C>T

Select item 14898190918.

rs1489819091 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:80192364 (GRCh38)
4:81113518 (GRCh37)
Canonical SPDI:: NC_000004.12:80192363:C:G,NC_000004.12:80192363:C:T
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.80192364C>G, NC_000004.12:g.80192364C>T, NC_000004.11:g.81113518C>G, NC_000004.11:g.81113518C>T, NG_046725.1:g.12095C>G, NG_046725.1:g.12095C>T

Select item 14892954869.

rs1489295486 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:80185985 (GRCh38)
4:81107139 (GRCh37)
Canonical SPDI:: NC_000004.12:80185984:A:G
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.80185985A>G, NC_000004.11:g.81107139A>G, NG_046725.1:g.5716A>G

Select item 148902535510.

rs1489025355 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:80192495 (GRCh38)
4:81113649 (GRCh37)
Canonical SPDI:: NC_000004.12:80192494:C:T
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000004.12:g.80192495C>T, NC_000004.11:g.81113649C>T, NG_046725.1:g.12226C>T

Select item 148896052011.

rs1488960520 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:80185857 (GRCh38)
4:81107011 (GRCh37)
Canonical SPDI:: NC_000004.12:80185856:C:A
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.80185857C>A, NC_000004.11:g.81107011C>A, NG_046725.1:g.5588C>A

Select item 148869477512.

rs1488694775 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:80184821 (GRCh38)
4:81105975 (GRCh37)
Canonical SPDI:: NC_000004.12:80184820:T:C
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.80184821T>C, NC_000004.11:g.81105975T>C, NG_046725.1:g.4552T>C

Select item 148843767913.

rs1488437679 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:80184483 (GRCh38)
4:81105637 (GRCh37)
Canonical SPDI:: NC_000004.12:80184482:T:C
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.80184483T>C, NC_000004.11:g.81105637T>C, NG_046725.1:g.4214T>C

Select item 148813383914.

rs1488133839 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:80194335 (GRCh38)
4:81115489 (GRCh37)
Canonical SPDI:: NC_000004.12:80194334:G:A,NC_000004.12:80194334:G:T
Gene:: PRDM8 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.80194335G>A, NC_000004.12:g.80194335G>T, NC_000004.11:g.81115489G>A, NC_000004.11:g.81115489G>T, NG_046725.1:g.14066G>A, NG_046725.1:g.14066G>T

Select item 148789558415.

rs1487895584 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:80192750 (GRCh38)
4:81113904 (GRCh37)
Canonical SPDI:: NC_000004.12:80192749:A:G
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.80192750A>G, NC_000004.11:g.81113904A>G, NG_046725.1:g.12481A>G

Select item 148760773216.

rs1487607732 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:80194536 (GRCh38)
4:81115690 (GRCh37)
Canonical SPDI:: NC_000004.12:80194535:C:T
Gene:: PRDM8 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000004.12:g.80194536C>T, NC_000004.11:g.81115690C>T, NG_046725.1:g.14267C>T

Select item 148745432617.

rs1487454326 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>- [Show Flanks]
Chromosome:: 4:80184168 (GRCh38)
4:81105322 (GRCh37)
Canonical SPDI:: NC_000004.12:80184164:GCGCG:GCG
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.80184166CG[1], NC_000004.11:g.81105320CG[1], NG_046725.1:g.3897CG[1]

Select item 148738209218.

rs1487382092 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:80193515 (GRCh38)
4:81114669 (GRCh37)
Canonical SPDI:: NC_000004.12:80193514:T:C
Gene:: PRDM8 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000036/5 (GnomAD)
HGVS:: NC_000004.12:g.80193515T>C, NC_000004.11:g.81114669T>C, NG_046725.1:g.13246T>C

Select item 148732148719.

rs1487321487 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:80185049 (GRCh38)
4:81106203 (GRCh37)
Canonical SPDI:: NC_000004.12:80185048:C:T
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
T=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.80185049C>T, NC_000004.11:g.81106203C>T, NG_046725.1:g.4780C>T, NG_077574.1:g.95C>T

Select item 148710103620.

rs1487101036 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:80186671 (GRCh38)
4:81107825 (GRCh37)
Canonical SPDI:: NC_000004.12:80186670:A:G
Gene:: PRDM8 (Varview), PRDM8-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.80186671A>G, NC_000004.11:g.81107825A>G, NG_046725.1:g.6402A>G

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