SNP Links for Gene (Select 105376789) - SNP

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Select item 14909686981.

rs1490968698 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:81806342 (GRCh38)
17:79764218 (GRCh37)
Canonical SPDI:: NC_000017.11:81806341:G:A
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.81806342G>A, NC_000017.10:g.79764218G>A, NG_016409.1:g.5169G>A, NW_021160021.1:g.19835G>A

Select item 14907373062.

rs1490737306 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:81800110 (GRCh38)
17:-1 (GRCh37)
Canonical SPDI:: NC_000017.11:81800109:C:T
Gene:: LOC105376789 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.81800110C>T, NW_021160021.1:g.13603C>T

Select item 14906140633.

rs1490614063 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:81804586 (GRCh38)
17:79762462 (GRCh37)
Canonical SPDI:: NC_000017.11:81804585:G:A
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.81804586G>A, NC_000017.10:g.79762462G>A, NG_016409.1:g.3413G>A, NW_021160021.1:g.18079G>A

Select item 14902378434.

rs1490237843 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:81799656 (GRCh38)
17:-1 (GRCh37)
Canonical SPDI:: NC_000017.11:81799655:C:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.81799656C>A, NW_021160021.1:g.13149C>A

Select item 14901206605.

rs1490120660 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:81805611 (GRCh38)
17:79763487 (GRCh37)
Canonical SPDI:: NC_000017.11:81805610:G:A
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.81805611G>A, NC_000017.10:g.79763487G>A, NG_016409.1:g.4438G>A, NW_021160021.1:g.19104G>A

Select item 14894754426.

rs1489475442 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:81805387 (GRCh38)
17:79763263 (GRCh37)
Canonical SPDI:: NC_000017.11:81805386:C:G,NC_000017.11:81805386:C:T
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000017.11:g.81805387C>G, NC_000017.11:g.81805387C>T, NC_000017.10:g.79763263C>G, NC_000017.10:g.79763263C>T, NG_016409.1:g.4214C>G, NG_016409.1:g.4214C>T, NW_021160021.1:g.18880C>G, NW_021160021.1:g.18880C>T

Select item 14890693747.

rs1489069374 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:81802852 (GRCh38)
17:79760728 (GRCh37)
Canonical SPDI:: NC_000017.11:81802851:G:A
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.81802852G>A, NC_000017.10:g.79760728G>A, NG_016409.1:g.1679G>A, NW_021160021.1:g.16345G>A, XR_933944.4:n.1206C>T, XR_933944.3:n.1480C>T, XR_933944.2:n.1566C>T, XR_933944.1:n.937C>T, XR_933943.4:n.1206C>T, XR_933943.3:n.1480C>T, XR_933943.2:n.1566C>T, XR_933943.1:n.937C>T, XR_001753044.3:n.1206C>T, XR_001753044.2:n.1480C>T, XR_001753044.1:n.1566C>T, XR_001753047.3:n.1206C>T, XR_001753047.2:n.1480C>T, XR_001753047.1:n.1566C>T, XR_001753045.3:n.1206C>T, XR_001753045.2:n.1480C>T, XR_001753045.1:n.1566C>T, XR_001753048.3:n.1206C>T, XR_001753048.2:n.1480C>T, XR_001753048.1:n.1566C>T, XR_007069350.1:n.1206C>T, XR_007069349.1:n.1206C>T, XR_007069352.1:n.1206C>T, XR_007069355.1:n.1206C>T, XR_007069353.1:n.1206C>T, XR_007069356.1:n.1206C>T

Select item 14883881508.

rs1488388150 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:81804828 (GRCh38)
17:79762704 (GRCh37)
Canonical SPDI:: NC_000017.11:81804827:C:G,NC_000017.11:81804827:C:T
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000343/1 (KOREAN)
HGVS:: NC_000017.11:g.81804828C>G, NC_000017.11:g.81804828C>T, NC_000017.10:g.79762704C>G, NC_000017.10:g.79762704C>T, NG_016409.1:g.3655C>G, NG_016409.1:g.3655C>T, NW_021160021.1:g.18321C>G, NW_021160021.1:g.18321C>T

Select item 14880223509.

rs1488022350 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:81804426 (GRCh38)
17:79762302 (GRCh37)
Canonical SPDI:: NC_000017.11:81804425:C:T
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.81804426C>T, NC_000017.10:g.79762302C>T, NG_016409.1:g.3253C>T, NW_021160021.1:g.17919C>T

Select item 148731303010.

rs1487313030 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:81800234 (GRCh38)
17:-1 (GRCh37)
Canonical SPDI:: NC_000017.11:81800233:C:A
Gene:: LOC105376789 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000017.11:g.81800234C>A, NW_021160021.1:g.13727C>A

Select item 148703786111.

rs1487037861 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:81804095 (GRCh38)
17:79761971 (GRCh37)
Canonical SPDI:: NC_000017.11:81804094:G:A,NC_000017.11:81804094:G:C
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.81804095G>A, NC_000017.11:g.81804095G>C, NC_000017.10:g.79761971G>A, NC_000017.10:g.79761971G>C, NG_016409.1:g.2922G>A, NG_016409.1:g.2922G>C, NW_021160021.1:g.17588G>A, NW_021160021.1:g.17588G>C

Select item 148680166512.

rs1486801665 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:81800695 (GRCh38)
17:-1 (GRCh37)
Canonical SPDI:: NC_000017.11:81800694:G:T
Gene:: LOC105376789 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.81800695G>T, NW_021160021.1:g.14188G>T, XR_933944.4:n.2899C>A, XR_933944.3:n.3173C>A, XR_933944.2:n.3259C>A, XR_933944.1:n.2630C>A, XR_933943.4:n.2821C>A, XR_933943.3:n.3095C>A, XR_933943.2:n.3181C>A, XR_933943.1:n.2552C>A, XR_001753044.3:n.2556C>A, XR_001753044.2:n.2830C>A, XR_001753044.1:n.2916C>A, XR_001753047.3:n.2415C>A, XR_001753047.2:n.2689C>A, XR_001753047.1:n.2775C>A, XR_001753045.3:n.2378C>A, XR_001753045.2:n.2652C>A, XR_001753045.1:n.2738C>A, XR_001753048.3:n.2103C>A, XR_001753048.2:n.2377C>A, XR_001753048.1:n.2463C>A, XR_001753043.3:n.1264C>A, XR_001753043.2:n.1526C>A, XR_001753043.1:n.1612C>A, XR_001753046.3:n.1202C>A, XR_001753046.2:n.1454C>A, XR_001753046.1:n.1540C>A, XR_007069350.1:n.2899C>A, XR_007069349.1:n.2821C>A, XR_007069352.1:n.2556C>A, XR_007069355.1:n.2415C>A, XR_007069353.1:n.2378C>A, XR_007069356.1:n.2103C>A, XR_007069351.1:n.1264C>A, XR_007069354.1:n.1202C>A

Select item 148654283813.

rs1486542838 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:81804007 (GRCh38)
17:79761883 (GRCh37)
Canonical SPDI:: NC_000017.11:81804006:A:G
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.81804007A>G, NC_000017.10:g.79761883A>G, NG_016409.1:g.2834A>G, NW_021160021.1:g.17500A>G

Select item 148612205314.

rs1486122053 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:81805099 (GRCh38)
17:79762975 (GRCh37)
Canonical SPDI:: NC_000017.11:81805098:G:A
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.81805099G>A, NC_000017.10:g.79762975G>A, NG_016409.1:g.3926G>A, NW_021160021.1:g.18592G>A

Select item 148601273515.

rs1486012735 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGGCTTCCTAGCGGGAG>- [Show Flanks]
Chromosome:: 17:81802909 (GRCh38)
17:79760785 (GRCh37)
Canonical SPDI:: NC_000017.11:81802907:GAGGCTTCCTAGCGGGAG:G
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.81802909_81802925del, NC_000017.10:g.79760785_79760801del, NG_016409.1:g.1736_1752del, NW_021160021.1:g.16402_16418del, XR_933944.4:n.1134_1150del, XR_933944.3:n.1408_1424del, XR_933944.2:n.1494_1510del, XR_933944.1:n.865_881del, XR_933943.4:n.1134_1150del, XR_933943.3:n.1408_1424del, XR_933943.2:n.1494_1510del, XR_933943.1:n.865_881del, XR_001753044.3:n.1134_1150del, XR_001753044.2:n.1408_1424del, XR_001753044.1:n.1494_1510del, XR_001753047.3:n.1134_1150del, XR_001753047.2:n.1408_1424del, XR_001753047.1:n.1494_1510del, XR_001753045.3:n.1134_1150del, XR_001753045.2:n.1408_1424del, XR_001753045.1:n.1494_1510del, XR_001753048.3:n.1134_1150del, XR_001753048.2:n.1408_1424del, XR_001753048.1:n.1494_1510del, XR_007069350.1:n.1134_1150del, XR_007069349.1:n.1134_1150del, XR_007069352.1:n.1134_1150del, XR_007069355.1:n.1134_1150del, XR_007069353.1:n.1134_1150del, XR_007069356.1:n.1134_1150del

Select item 148572290316.

rs1485722903 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:81801917 (GRCh38)
17:79759793 (GRCh37)
Canonical SPDI:: NC_000017.11:81801916:T:G
Gene:: LOC105376789 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.81801917T>G, NC_000017.10:g.79759793T>G, NG_016409.1:g.744T>G, NW_021160021.1:g.15410T>G, XR_933944.4:n.2141A>C, XR_933944.3:n.2415A>C, XR_933944.2:n.2501A>C, XR_933944.1:n.1872A>C, XR_933943.4:n.2141A>C, XR_933943.3:n.2415A>C, XR_933943.2:n.2501A>C, XR_933943.1:n.1872A>C, XR_001753045.3:n.1698A>C, XR_001753045.2:n.1972A>C, XR_001753045.1:n.2058A>C, XR_001753043.3:n.584A>C, XR_001753043.2:n.846A>C, XR_001753043.1:n.932A>C, XR_001753046.3:n.522A>C, XR_001753046.2:n.774A>C, XR_001753046.1:n.860A>C, XR_007069350.1:n.2141A>C, XR_007069349.1:n.2141A>C, XR_007069353.1:n.1698A>C, XR_007069351.1:n.584A>C, XR_007069354.1:n.522A>C

Select item 148551675017.

rs1485516750 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 17:81803626 (GRCh38)
17:79761502 (GRCh37)
Canonical SPDI:: NC_000017.11:81803625:T:
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000091/24 (TOPMED)
-=0.000212/4 (TOMMO)
HGVS:: NC_000017.11:g.81803626del, NC_000017.10:g.79761502del, NG_016409.1:g.2453del, NW_021160021.1:g.17119del, XR_933944.4:n.432del, XR_933944.3:n.706del, XR_933944.2:n.792del, XR_933944.1:n.163del, XR_933943.4:n.432del, XR_933943.3:n.706del, XR_933943.2:n.792del, XR_933943.1:n.163del, XR_001753044.3:n.432del, XR_001753044.2:n.706del, XR_001753044.1:n.792del, XR_001753047.3:n.432del, XR_001753047.2:n.706del, XR_001753047.1:n.792del, XR_001753045.3:n.432del, XR_001753045.2:n.706del, XR_001753045.1:n.792del, XR_001753048.3:n.432del, XR_001753048.2:n.706del, XR_001753048.1:n.792del, XR_007069350.1:n.432del, XR_007069349.1:n.432del, XR_007069352.1:n.432del, XR_007069355.1:n.432del, XR_007069353.1:n.432del, XR_007069356.1:n.432del

Select item 148535644618.

rs1485356446 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:81799394 (GRCh38)
17:-1 (GRCh37)
Canonical SPDI:: NC_000017.11:81799393:G:A,NC_000017.11:81799393:G:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000017.11:g.81799394G>A, NC_000017.11:g.81799394G>C, NW_021160021.1:g.12887G>A, NW_021160021.1:g.12887G>C

Select item 148513071319.

rs1485130713 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:81801620 (GRCh38)
17:79759496 (GRCh37)
Canonical SPDI:: NC_000017.11:81801619:C:T
Gene:: LOC105376789 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000106/2 (TOMMO)
HGVS:: NC_000017.11:g.81801620C>T, NC_000017.10:g.79759496C>T, NG_016409.1:g.447C>T, NW_021160021.1:g.15113C>T, XR_933944.4:n.2438G>A, XR_933944.3:n.2712G>A, XR_933944.2:n.2798G>A, XR_933944.1:n.2169G>A, XR_933943.4:n.2438G>A, XR_933943.3:n.2712G>A, XR_933943.2:n.2798G>A, XR_933943.1:n.2169G>A, XR_001753044.3:n.2173G>A, XR_001753044.2:n.2447G>A, XR_001753044.1:n.2533G>A, XR_001753047.3:n.2032G>A, XR_001753047.2:n.2306G>A, XR_001753047.1:n.2392G>A, XR_001753045.3:n.1995G>A, XR_001753045.2:n.2269G>A, XR_001753045.1:n.2355G>A, XR_001753043.3:n.881G>A, XR_001753043.2:n.1143G>A, XR_001753043.1:n.1229G>A, XR_001753046.3:n.819G>A, XR_001753046.2:n.1071G>A, XR_001753046.1:n.1157G>A, XR_007069350.1:n.2438G>A, XR_007069349.1:n.2438G>A, XR_007069352.1:n.2173G>A, XR_007069355.1:n.2032G>A, XR_007069353.1:n.1995G>A, XR_007069351.1:n.881G>A, XR_007069354.1:n.819G>A

Select item 148512372920.

rs1485123729 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:81805489 (GRCh38)
17:79763365 (GRCh37)
Canonical SPDI:: NC_000017.11:81805488:G:A
Gene:: GCGR (Varview), LOC105376789 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.81805489G>A, NC_000017.10:g.79763365G>A, NG_016409.1:g.4316G>A, NW_021160021.1:g.18982G>A

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