SNP Links for Gene (Select 105376166) - SNP

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Items: 1 to 20 of 2028

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Select item 14913949231.

rs1491394923 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA,TTTTTTTTTTA [Show Flanks]
Chromosome:: 9:97129748 (GRCh38)
9:99892031 (GRCh37)
Canonical SPDI:: NC_000009.12:97129748::TA,NC_000009.12:97129748::TTTTTTTTTTA
Gene:: LOC105376166 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTTTTTTTTTA=0./0 (ALFA)
TA=0.0001/5 (GnomAD)
HGVS:: NC_000009.12:g.97129748_97129749insTA, NC_000009.12:g.97129748_97129749insTTTTTTTTTTA, NC_000009.11:g.99892030_99892031insTA, NC_000009.11:g.99892030_99892031insTTTTTTTTTTA

Select item 14913382672.

rs1491338267 has merged into rs766630518 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 9:97129750 (GRCh38)
9:99892032 (GRCh37)
Canonical SPDI:: NC_000009.12:97129747:TATA:TA
Gene:: LOC105376166 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATA=0./0 (ALFA)
-=0.00121/17 (TOMMO)
-=0.00137/66 (GnomAD)
-=0.49611/1912 (ALSPAC)
HGVS:: NC_000009.12:g.97129748TA[1], NC_000009.11:g.99892030TA[1]

Select item 14911047543.

rs1491104754 has merged into rs138767875 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACA>-,CACA,CACACA,CACACACACA,CACACACACACA,CACACACACACACA [Show Flanks]
Chromosome:: 9:97128998 (GRCh38)
9:99891280 (GRCh37)
Canonical SPDI:: NC_000009.12:97128986:ACACACACACACACACACA:ACACACACACA,NC_000009.12:97128986:ACACACACACACACACACA:ACACACACACACACA,NC_000009.12:97128986:ACACACACACACACACACA:ACACACACACACACACA,NC_000009.12:97128986:ACACACACACACACACACA:ACACACACACACACACACACA,NC_000009.12:97128986:ACACACACACACACACACA:ACACACACACACACACACACACA,NC_000009.12:97128986:ACACACACACACACACACA:ACACACACACACACACACACACACA
Gene:: LOC105376166 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACA=0./0 (ALFA)
-=0.000042/11 (TOPMED)
AC=0.125/5 (GENOME_DK)
AC=0.193333/116 (NorthernSweden)
AC=0.287141/1438 (1000Genomes)
HGVS:: NC_000009.12:g.97128988CA[5], NC_000009.12:g.97128988CA[7], NC_000009.12:g.97128988CA[8], NC_000009.12:g.97128988CA[10], NC_000009.12:g.97128988CA[11], NC_000009.12:g.97128988CA[12], NC_000009.11:g.99891270CA[5], NC_000009.11:g.99891270CA[7], NC_000009.11:g.99891270CA[8], NC_000009.11:g.99891270CA[10], NC_000009.11:g.99891270CA[11], NC_000009.11:g.99891270CA[12]

Select item 14906605014.

rs1490660501 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:97126601 (GRCh38)
9:99888883 (GRCh37)
Canonical SPDI:: NC_000009.12:97126600:A:T
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97126601A>T, NC_000009.11:g.99888883A>T, XR_930154.3:n.2050T>A, XR_930154.2:n.2050T>A, XR_007061683.1:n.2319T>A

Select item 14901687925.

rs1490168792 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:97127254 (GRCh38)
9:99889536 (GRCh37)
Canonical SPDI:: NC_000009.12:97127253:A:G
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000036/5 (GnomAD)
G=0.000076/20 (TOPMED)
G=0.000342/1 (KOREAN)
G=0.000425/7 (TOMMO)
G=0.00463/1 (Vietnamese)
HGVS:: NC_000009.12:g.97127254A>G, NC_000009.11:g.99889536A>G, XR_930154.3:n.1397T>C, XR_930154.2:n.1397T>C, XR_007061683.1:n.1666T>C

Select item 14893493576.

rs1489349357 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:97126477 (GRCh38)
9:99888759 (GRCh37)
Canonical SPDI:: NC_000009.12:97126476:C:G,NC_000009.12:97126476:C:T
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.97126477C>G, NC_000009.12:g.97126477C>T, NC_000009.11:g.99888759C>G, NC_000009.11:g.99888759C>T, XR_930154.3:n.2174G>C, XR_930154.3:n.2174G>A, XR_930154.2:n.2174G>C, XR_930154.2:n.2174G>A, XR_007061683.1:n.2443G>C, XR_007061683.1:n.2443G>A

Select item 14892499657.

rs1489249965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97127831 (GRCh38)
9:99890113 (GRCh37)
Canonical SPDI:: NC_000009.12:97127830:C:T
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000009.12:g.97127831C>T, NC_000009.11:g.99890113C>T, XR_930154.3:n.820G>A, XR_930154.2:n.820G>A, XR_007061683.1:n.1089G>A

Select item 14890048908.

rs1489004890 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97128982 (GRCh38)
9:99891264 (GRCh37)
Canonical SPDI:: NC_000009.12:97128981:C:T
Gene:: LOC105376166 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000038/10 (TOPMED)
T=0.000071/9 (GnomAD)
HGVS:: NC_000009.12:g.97128982C>T, NC_000009.11:g.99891264C>T

Select item 14887011049.

rs1488701104 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:97131881 (GRCh38)
9:99894163 (GRCh37)
Canonical SPDI:: NC_000009.12:97131880:G:T
Gene:: LOC105376166 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97131881G>T, NC_000009.11:g.99894163G>T

Select item 148778866610.

rs1487788666 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:97131596 (GRCh38)
9:99893878 (GRCh37)
Canonical SPDI:: NC_000009.12:97131595:G:A
Gene:: LOC105376166 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97131596G>A, NC_000009.11:g.99893878G>A

Select item 148738889411.

rs1487388894 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:97124337 (GRCh38)
9:99886619 (GRCh37)
Canonical SPDI:: NC_000009.12:97124336:A:G
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97124337A>G, NC_000009.11:g.99886619A>G, XR_930154.3:n.4314T>C, XR_930154.2:n.4314T>C, XR_007061683.1:n.4583T>C

Select item 148708503312.

rs1487085033 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:97128852 (GRCh38)
9:99891134 (GRCh37)
Canonical SPDI:: NC_000009.12:97128851:G:A
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000093/13 (GnomAD)
A=0.000193/51 (TOPMED)
HGVS:: NC_000009.12:g.97128852G>A, NC_000009.11:g.99891134G>A, XR_930154.3:n.68C>T, XR_930154.2:n.68C>T, XR_930154.1:n.68C>T, XR_007061683.1:n.68C>T

Select item 148695902413.

rs1486959024 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:97125122 (GRCh38)
9:99887404 (GRCh37)
Canonical SPDI:: NC_000009.12:97125121:C:G
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.97125122C>G, NC_000009.11:g.99887404C>G, XR_930154.3:n.3529G>C, XR_930154.2:n.3529G>C, XR_007061683.1:n.3798G>C

Select item 148679169814.

rs1486791698 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:97123921 (GRCh38)
9:99886203 (GRCh37)
Canonical SPDI:: NC_000009.12:97123920:G:A
Gene:: LOC105376166 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.97123921G>A, NC_000009.11:g.99886203G>A

Select item 148671792915.

rs1486717929 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:97127184 (GRCh38)
9:99889466 (GRCh37)
Canonical SPDI:: NC_000009.12:97127183:A:G
Gene:: LOC105376166 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.97127184A>G, NC_000009.11:g.99889466A>G, XR_930154.3:n.1467T>C, XR_930154.2:n.1467T>C, XR_007061683.1:n.1736T>C

Select item 148556527916.

rs1485565279 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:97130280 (GRCh38)
9:99892562 (GRCh37)
Canonical SPDI:: NC_000009.12:97130279:T:C
Gene:: LOC105376166 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000239/4 (TOMMO)
HGVS:: NC_000009.12:g.97130280T>C, NC_000009.11:g.99892562T>C

Select item 148522008117.

rs1485220081 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:97129665 (GRCh38)
9:99891947 (GRCh37)
Canonical SPDI:: NC_000009.12:97129664:T:A
Gene:: LOC105376166 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.0005/1 (Korea1K)
HGVS:: NC_000009.12:g.97129665T>A, NC_000009.11:g.99891947T>A

Select item 148508487318.

rs1485084873 [Homo sapiens]

Variant type:: SNV:
Alleles:: CTCT>-
Chromosome:: no mapping
Canonical SPDI:

Select item 148471807119.

rs1484718071 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:97130907 (GRCh38)
9:99893189 (GRCh37)
Canonical SPDI:: NC_000009.12:97130906:A:G
Gene:: LOC105376166 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.97130907A>G, NC_000009.11:g.99893189A>G

Select item 148458546120.

rs1484585461 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:97130510 (GRCh38)
9:99892792 (GRCh37)
Canonical SPDI:: NC_000009.12:97130509:C:A,NC_000009.12:97130509:C:T
Gene:: LOC105376166 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000008/2 (TOPMED)
T=0.000047/6 (GnomAD)
HGVS:: NC_000009.12:g.97130510C>A, NC_000009.12:g.97130510C>T, NC_000009.11:g.99892792C>A, NC_000009.11:g.99892792C>T

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